Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I16
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          28   7.6  
SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_23962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 280 LLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFGD 429
           +L+  F   P E    S L+ G+ E  + AF+ +    + N G   G+GD
Sbjct: 35  ILNEDFEVNP-EEFPGSFLRGGILEGSWFAFVSFTTVGYVNEGGLDGYGD 83


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 626 VQLLEKYVVTPLLAKPRLVNLGASP*MAFLVF 531
           +  L + V TPLL   R VNLG  P    L+F
Sbjct: 93  IDKLREVVETPLLHPERFVNLGIEPPKGVLLF 124


>SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +1

Query: 55  LIKYCTQRT*KIIMEDKSNFLLPNNQRFVELDSSQAFDNLTTNXKLYAHYLSQAAWN 225
           L+ Y  +R  + +    ++F L   Q F++    Q +D ++T  + YA+YL++ AW+
Sbjct: 76  LMSYGNERFIQYMASRTTSFTL---QGFLDKSGVQGYD-MSTFVRRYANYLNEKAWS 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,898,023
Number of Sequences: 59808
Number of extensions: 381114
Number of successful extensions: 880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)