Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I15
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 129 4e-31
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 60 3e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 55 7e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 54 2e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 52 7e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 52 7e-08
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 48 8e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 6e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 8e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 1e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 5e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 5e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 5e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 40 2e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 3e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 9e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.001
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.001
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.003
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.006
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 36 0.006
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.014
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.019
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 34 0.019
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.043
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.057
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 32 0.075
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.23
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.30
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.30
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 29 0.70
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 1.6
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 2.1
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.1
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 3.7
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 3.7
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.9
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 4.9
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 25 6.5
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 6.5
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 129 bits (311), Expect = 4e-31
Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Frame = +2
Query: 98 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 274
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 275 HFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH----TINNXXXXXXX 442
+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ H I+
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPRE 241
Query: 443 XXXRHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+ K+FVGG+ + +++E RNFF++FG +L + DK + +GF F+T+E+
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/66 (31%), Positives = 39/66 (59%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 401 GEHTIN 418
TI+
Sbjct: 308 PYITIH 313
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 59.7 bits (138), Expect = 3e-10
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +2
Query: 122 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIX 301
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 302 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 412
+ + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 33.5 bits (73), Expect = 0.025
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 55.2 bits (127), Expect = 7e-09
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
+FVG LS+ T+ +L FG G+I SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 404 EHTI 415
H I
Sbjct: 428 GHFI 431
Score = 52.4 bits (120), Expect = 5e-08
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Frame = +2
Query: 200 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 374 ESIDKVMAA-GEHTINNXXXXXXXXXXR------HGKIFVGGLSSEIS------------ 496
E+ +AA G I+ R + + G ++S
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 497 ----DDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+D++ F G I + +P D + KGF ++TF
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 53.6 bits (123), Expect = 2e-08
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 404 EHTINNXXXXXXXXXXRH--------GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 559
+T+ R G +F+ L I + + + FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 560 DKTKNQXKGFCFITFES 610
D+ N KG+ F+ F+S
Sbjct: 202 DELGN-AKGYGFVHFDS 217
Score = 46.4 bits (105), Expect = 3e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 52.0 bits (119), Expect = 7e-08
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +2
Query: 206 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
+D R +FVG L++E ++ L +FG G I + + DP T +GFA+I FK +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 386 KVMAAGE 406
K + E
Sbjct: 326 KALLLNE 332
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 52.0 bits (119), Expect = 7e-08
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Frame = +2
Query: 188 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 361
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 362 FKAPES--IDKVMAAGEHTI 415
F P++ I K + HTI
Sbjct: 140 FINPKTDVISKALKF-HHTI 158
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FVG L + S + ++ F G + V +P DKT + KG+ F+ F
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 48.4 bits (110), Expect = 8e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 206 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
RDD L V LS +T ++ELRD F +G I + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 470 VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.0 bits (109), Expect = 1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 391
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 392 M 394
+
Sbjct: 113 L 113
Score = 33.9 bits (74), Expect = 0.019
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++VG + ++ +E+++ F+ G++ V + DK KGF +I F
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 149 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 319
+ E+ G S D NS RD++ +FV L +E T++EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 320 DPNTGRSRGFAFIVFK 367
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
LFV L+++T +L + F G I V T+P TG +RG+ F+ F E +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Score = 33.9 bits (74), Expect = 0.019
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 29.1 bits (62), Expect = 0.53
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FV L E ++ E+ N F +FG + ++ D ++ G FI F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 131 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSIN 310
+++++ N E+ D ++ SA + LFV G++ + EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 311 VKTDPNTGRSRGFAFIVFKAPE 376
+ +P T SRGF F+ F E
Sbjct: 132 IMREPVTKASRGFGFLSFSTVE 153
Score = 42.7 bits (96), Expect = 4e-05
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+FV G++S + +DE++ FS+FGT+ V + + +GF F++F +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 45.2 bits (102), Expect = 8e-06
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 155 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 334
E G G ++ P + VG LS++ T+ +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 335 RSRGFAFIVFKAPESIDKVMA-AGE 406
RSRGF ++ F+ +++ +A +GE
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGE 155
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++F+ L+ ++D++++ F FG + V MP DK N KGF +I F
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +2
Query: 179 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 358
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 359 VFKAPESI 382
F SI
Sbjct: 141 SFDKRSSI 148
Score = 32.3 bits (70), Expect = 0.057
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
++FV +S ++ +++R F FG + +++ + G C I+F+
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
D + +F+ LS++T + ++ F YG I I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 42.3 bits (95), Expect = 5e-05
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 391
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 392 MA-AGEHTINNXXXXXXXXXXRHGK-------------------IFVGGLSSEISDDEIR 511
+A +G+ + ++ K + V + ++D++++
Sbjct: 298 IALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVK 357
Query: 512 NFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
F FG I V + D +N+ KGF +I + +
Sbjct: 358 AIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 34.3 bits (75), Expect = 0.014
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
+L V + + TD++++ F +G+I ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 42.3 bits (95), Expect = 5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK----APESIDKV 391
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 42.3 bits (95), Expect = 5e-05
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
I++G L ++++D+I FSEFG + + + DK + KGF F+ +E
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
Score = 41.9 bits (94), Expect = 7e-05
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 404 EHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXK 583
E TI + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 584 GFCFITFES 610
+ FI FES
Sbjct: 147 HYAFIEFES 155
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 29.9 bits (64), Expect = 0.30
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+FV L+ D+++ FS FG I+ ++ DK + FI F++
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDN 294
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 565
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.3 bits (85), Expect = 9e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/51 (27%), Positives = 35/51 (68%)
Frame = +2
Query: 455 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
H ++FVG L ++++D+ + FSE+ +++ ++ D+ + + +GF F++F+
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFK 78
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK----TKNQXKGFCFITFES 610
++FVG LS+ EIR+ F GT+ V +PF + T+ G F+TF +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNN 98
Score = 36.3 bits (80), Expect = 0.003
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +2
Query: 170 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGR 337
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 338 SR----GFAFIVFKAPESIDKVM 394
+R G AF+ F E +DK +
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAI 106
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMP 556
+FVGGLS +S++E++ F FG I+ V++P
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 33.9 bits (74), Expect = 0.019
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVF 364
+FVG LS + ++ F + Y S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.70
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 334
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.7 bits (81), Expect = 0.003
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
+FVG + ++ +++++ + F G + + + DP TG +G+ F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
Score = 31.1 bits (67), Expect = 0.13
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FVG + ++S+ ++ F++ G + ++ D KG+ F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.006
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 170 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIXSINVKTDPNTGRS 340
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 341 RGFAFIVFKAPES 379
+G+ F+ F+ E+
Sbjct: 425 KGYGFVAFRQIEA 437
Score = 32.7 bits (71), Expect = 0.043
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 179 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
+++ PG+ D+ ++VG + +D+E+ HF YG++ SI
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 29.9 bits (64), Expect = 0.30
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTI 538
I+VG + S +SD+EI FS++G +
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
++VG + +E ++++ D F G + S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 31.1 bits (67), Expect = 0.13
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 35.5 bits (78), Expect = 0.006
Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Frame = +2
Query: 206 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
R+ D +++G L + TD L + G + +I++ D GF F F + ++
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 386 -------KVMAAGEHT-INNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTIL 541
+V G+ +N +FVG L + + + + FS G ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 542 XVEMPFDKTKNQXKGFCFITFES 610
+ KG+ F++++S
Sbjct: 127 KAPQVARDENGRSKGYGFVSYDS 149
Score = 35.5 bits (78), Expect = 0.006
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
LFVG L ++ L D F A G++ GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.3 bits (75), Expect = 0.014
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++VG LS ++++I FS+ G I + M D+ GFCF+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
Score = 32.7 bits (71), Expect = 0.043
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI-VFKAPESIDKV 391
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSL 90
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.9 bits (74), Expect = 0.019
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
D K+++ L + ++ + +G++ S + + G S+GF F FK P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 389 VMAA--GEHTINN 421
++ G+ T N
Sbjct: 367 AISGLDGKDTYGN 379
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.9 bits (74), Expect = 0.019
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTK-NQXKGFCFITFES 610
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRT 56
Score = 33.1 bits (72), Expect = 0.033
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINV--KTDPNTGRSRGFAFIVFKAPE 376
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.043
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
I V G+ E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.3 bits (70), Expect = 0.057
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
I V L+ ++ + I F +G I + MP K KG+C+I +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEY 147
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.075
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHF-GAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
++ K+ V L + T+ ++++ F + G +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.23
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 260 KELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
++L + F +G I S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKG------FCFITFES 610
I+VG L S ++ F FG M + KN+ F FITFE+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKKNKSTDSKSPTLFAFITFEN 75
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 328
R +F+G L +KE+ + FG +G+I I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEM 553
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.9 bits (64), Expect = 0.30
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 452 RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
R +++ GL SD+ + + + FG + + D N KG+ F FE
Sbjct: 294 RTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFE 345
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 482 SSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+ +++D +R+ +S FGT+ V + D +K + + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 328
R +F+G L T+ E+R+ +G I I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTI 538
+F+G L + I++DEIR FG I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPI 232
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 185 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 328
N A A R +++G T + L++ F +GEI +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 194 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
E P LF+ G+ E D ++R HF YG + S+
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 231 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 118
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 341 RGFAFIVFKAPESIDKVMAAGEHTINN 421
RGFA IVF A S ++V G H +N+
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNH 213
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGAYGEI 298
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEM 553
++V L I+ E+R++F FG IL ++
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV 207
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 4.9
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTI 538
+F+GG++ + + +R+ F FG++
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSV 432
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 448 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTXYFTV 287
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 479 LSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGF 589
L+S ++E+RN FSEF L E+ F+ ++ + F
Sbjct: 958 LNSFFDNEELRNEFSEFIQHLESEVSFNSLRSFVQEF 994
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 494 SDDEIRNFFSEFGTILXVEM 553
+++ IR+FFS+FG + VE+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,559
Number of Sequences: 5004
Number of extensions: 45380
Number of successful extensions: 205
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -