Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I15
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 97 8e-21
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 96 1e-20
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 96 1e-20
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 96 1e-20
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 96 2e-20
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 95 3e-20
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 95 3e-20
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 93 1e-19
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 92 2e-19
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 92 2e-19
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 90 9e-19
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 90 9e-19
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 89 2e-18
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 78 4e-15
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 70 1e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 2e-12
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 67 7e-12
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 65 4e-11
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 64 7e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 64 7e-11
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 64 9e-11
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 2e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 2e-10
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 61 5e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 61 7e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 60 9e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 60 9e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 1e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 1e-09
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 60 1e-09
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 60 2e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 58 3e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 3e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 3e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 3e-09
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 58 5e-09
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 58 5e-09
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 58 5e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 58 5e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 58 5e-09
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 58 6e-09
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 58 6e-09
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 58 6e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 1e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 2e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 56 2e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 56 2e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 56 2e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 55 3e-08
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 55 3e-08
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 55 3e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 3e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 55 4e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 55 4e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 55 4e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 55 4e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 55 4e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 54 6e-08
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 54 6e-08
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 54 6e-08
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 54 7e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 54 7e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 1e-07
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 54 1e-07
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 54 1e-07
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 53 1e-07
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 53 1e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 53 1e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 53 2e-07
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 53 2e-07
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 53 2e-07
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 53 2e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 52 4e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 52 4e-07
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 51 7e-07
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 51 7e-07
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 51 7e-07
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 50 9e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 50 9e-07
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 9e-07
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 50 1e-06
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 50 2e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 2e-06
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 49 2e-06
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 49 2e-06
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 49 2e-06
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 49 2e-06
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 49 3e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 49 3e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 5e-06
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 48 5e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 48 5e-06
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 48 5e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 48 6e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 47 9e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 47 9e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 9e-06
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 47 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 1e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 46 1e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 1e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 2e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 3e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 46 3e-05
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 45 3e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 45 3e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 45 5e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 45 5e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 45 5e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 6e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 44 6e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 44 8e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 8e-05
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 44 8e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 44 1e-04
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 44 1e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 1e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 1e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 1e-04
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 43 1e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 43 1e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 43 2e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 43 2e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 42 2e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 42 2e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 2e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 42 2e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 42 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 42 3e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 42 4e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 41 7e-04
At2g47310.1 68415.m05906 flowering time control protein-related ... 41 7e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 41 7e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 40 0.001
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 40 0.001
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 40 0.001
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 40 0.002
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.002
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 39 0.002
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.002
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 39 0.003
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 38 0.004
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.005
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.005
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.005
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.007
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.007
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.007
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 38 0.007
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 38 0.007
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 37 0.009
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 37 0.012
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 37 0.012
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 37 0.012
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.012
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.012
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.012
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 36 0.016
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.016
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 36 0.021
At5g51300.2 68418.m06360 splicing factor-related contains simila... 35 0.037
At5g51300.1 68418.m06359 splicing factor-related contains simila... 35 0.037
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.037
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.037
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.037
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.037
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.049
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.049
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 34 0.065
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.065
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.15
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 33 0.20
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 32 0.26
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 32 0.26
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 32 0.26
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.26
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 32 0.34
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 32 0.34
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 32 0.34
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 32 0.34
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.34
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 31 0.46
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 31 0.46
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.46
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.46
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 31 0.60
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.60
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 31 0.60
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.80
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.80
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 30 1.1
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 30 1.1
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 30 1.1
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 30 1.1
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.4
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 1.8
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 29 1.8
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 2.4
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 2.4
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 29 2.4
At2g47390.1 68415.m05915 expressed protein 29 2.4
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 3.2
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.2
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 28 4.2
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 28 4.2
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 28 4.2
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 5.6
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 28 5.6
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 5.6
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 28 5.6
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 28 5.6
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 5.6
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 27 7.4
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 9.8
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 9.8
At1g09810.1 68414.m01101 expressed protein contains Pfam profile... 27 9.8
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 97.1 bits (231), Expect = 8e-21
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Frame = +2
Query: 116 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGE 295
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG YGE
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE 67
Query: 296 IXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRHG----- 460
I + D TG+ RGF F+ + +DKV+ H I R
Sbjct: 68 ITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPRGSMSSND 126
Query: 461 ----KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KIFVGG+ S + DDE + FF +FG + ++ D + + +GF F+T+ES
Sbjct: 127 FKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
Score = 57.2 bits (132), Expect = 8e-09
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+K+FVGG+ D E ++ F +GE+ + D +TGRSRGF F+ +++ + +D ++A
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 398 AG 403
G
Sbjct: 190 KG 191
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 96.3 bits (229), Expect = 1e-20
Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 25/155 (16%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 401 GEHTINNXXXXXXXXXXR-------------------HG------KIFVGGLSSEISDDE 505
+H I+ R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 506 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+N+F +FGTI V + +D + +GF FITF+S
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 398 AGEHTIN 418
H +N
Sbjct: 170 KTFHELN 176
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +2
Query: 458 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
GK+F+GG+S + ++ +R++FS +G ++ + D+ + +GF FI F
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 96.3 bits (229), Expect = 1e-20
Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 25/155 (16%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 401 GEHTINNXXXXXXXXXXR-------------------HG------KIFVGGLSSEISDDE 505
+H I+ R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 506 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+N+F +FGTI V + +D + +GF FITF+S
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 398 AGEHTIN 418
H +N
Sbjct: 170 KTFHELN 176
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +2
Query: 458 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
GK+F+GG+S + ++ +R++FS +G ++ + D+ + +GF FI F
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 96.3 bits (229), Expect = 1e-20
Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 25/155 (16%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 401 GEHTINNXXXXXXXXXXR-------------------HG------KIFVGGLSSEISDDE 505
+H I+ R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 506 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+N+F +FGTI V + +D + +GF FITF+S
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 398 AGEHTIN 418
H +N
Sbjct: 170 KTFHELN 176
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +2
Query: 458 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
GK+F+GG+S + ++ +R++FS +G ++ + D+ + +GF FI F
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 95.9 bits (228), Expect = 2e-20
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 24/157 (15%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 391
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 392 -----------------MAAGEHTINNXXXXXXXXXXRHG-------KIFVGGLSSEISD 499
M+ E ++ G KIFVGGL ++D
Sbjct: 64 LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123
Query: 500 DEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+E R +F +G + V + +D+ N+ +GF F++F+S
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Frame = +2
Query: 116 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHFGA 286
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 287 YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTIN 418
YG + + + D T R RGF F+ F + +++D V+ H ++
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLS 176
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 95.1 bits (226), Expect = 3e-20
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Frame = +2
Query: 164 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 343
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 344 GFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRHG-----------KIFVGGLSSE 490
GF FI F P +DKV+ H IN + KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 491 ISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+++DE+++FF+++G ++ ++ D N+ +GF F+ F+S
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
Score = 60.9 bits (141), Expect = 7e-10
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 398 AG 403
G
Sbjct: 169 KG 170
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 95.1 bits (226), Expect = 3e-20
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Frame = +2
Query: 164 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 343
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 344 GFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRHG-----------KIFVGGLSSE 490
GF FI F P +DKV+ H IN + KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 491 ISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+++DE+++FF+++G ++ ++ D N+ +GF F+ F+S
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
Score = 60.9 bits (141), Expect = 7e-10
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 398 AG 403
G
Sbjct: 169 KG 170
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 93.5 bits (222), Expect = 1e-19
Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 17/179 (9%)
Frame = +2
Query: 125 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 289
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Query: 290 GEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRHG--- 460
GE+ + TD TG RGF F+ F +KV+ +H I++ R
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRGDKDT 148
Query: 461 ---------KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KIFVGGL + +DE++N+F +G I+ ++ +D + +GF F+TF++
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQT 207
Score = 61.3 bits (142), Expect = 5e-10
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
RK+FVGGL + EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 398 AGE 406
G+
Sbjct: 217 DGK 219
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 92.3 bits (219), Expect = 2e-19
Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 20/150 (13%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV--- 391
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 392 --------------MAAGEHTI---NNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFF 520
+ +H + +N KIFVGGL+S +++ E + +F
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
Query: 521 SEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++FG I V + +D + +GF FI+++S
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDS 156
Score = 63.7 bits (148), Expect = 9e-11
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +2
Query: 197 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 377 SIDKVMAAGEHTIN 418
++DKV+ H +N
Sbjct: 159 AVDKVLQKTFHELN 172
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 92.3 bits (219), Expect = 2e-19
Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 20/150 (13%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV--- 391
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 392 --------------MAAGEHTI---NNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFF 520
+ +H + +N KIFVGGL+S +++ E + +F
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
Query: 521 SEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++FG I V + +D + +GF FI+++S
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDS 156
Score = 63.7 bits (148), Expect = 9e-11
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +2
Query: 197 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 377 SIDKVMAAGEHTIN 418
++DKV+ H +N
Sbjct: 159 AVDKVLQKTFHELN 172
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 90.2 bits (214), Expect = 9e-19
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 23/158 (14%)
Frame = +2
Query: 206 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 386 KVMAAGEHTINNXXXXXXXXXXRHG-----------------------KIFVGGLSSEIS 496
+++ +H I+ R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 497 DDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+ + + +F +FGT V + +D + +GF FIT++S
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/90 (35%), Positives = 46/90 (51%)
Frame = +2
Query: 149 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 328
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 329 TGRSRGFAFIVFKAPESIDKVMAAGEHTIN 418
T R RGF FI + + E+++KV+ H +N
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELN 174
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 90.2 bits (214), Expect = 9e-19
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 23/158 (14%)
Frame = +2
Query: 206 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 386 KVMAAGEHTINNXXXXXXXXXXRHG-----------------------KIFVGGLSSEIS 496
+++ +H I+ R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 497 DDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+ + + +F +FGT V + +D + +GF FIT++S
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/90 (35%), Positives = 46/90 (51%)
Frame = +2
Query: 149 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 328
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 329 TGRSRGFAFIVFKAPESIDKVMAAGEHTIN 418
T R RGF FI + + E+++KV+ H +N
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELN 174
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 89.4 bits (212), Expect = 2e-18
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 24/157 (15%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 391
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 392 MAAGEH------------------------TINNXXXXXXXXXXRHGKIFVGGLSSEISD 499
+ H T N R KIFVGGL ++
Sbjct: 64 LQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTS 123
Query: 500 DEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
DE R +F +G + + D+T + +GF F++F+S
Sbjct: 124 DEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
Score = 54.0 bits (124), Expect = 7e-08
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+K+FVGGL T E R +F YG + + D T R RGF F+ F + +S+D V+
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 398 AGEHTIN 418
H +N
Sbjct: 170 KTFHDLN 176
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 78.2 bits (184), Expect = 4e-15
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
+RKL V G+ W+ L+D+ +G++ V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 395 AAGEHTINNXXXXXXXXXXRH---------GKIFVGGLSSEISDDEIRNFFSEFGTILXV 547
GEH + N + +IFV + S +S+ + R+ F +G I +
Sbjct: 62 -KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 548 EMPFDKTKNQXKGFCFITFES 610
MP D Q +G FITF S
Sbjct: 121 YMPKDYNSKQHRGIGFITFSS 141
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/78 (34%), Positives = 36/78 (46%)
Frame = +2
Query: 182 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 361
+ E R K+FVG L E + +LRD+FG +G I + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 362 FKAPESIDKVMAAGEHTI 415
F D+V A H I
Sbjct: 288 FAENGVADRV-ARRSHEI 304
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
KIFVG L E S D++R++F FG I +P D ++ +GF F+TF
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
++FV + ++ + R HF YGEI + + D N+ + RG FI F + +S++ +M
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 69.7 bits (163), Expect = 1e-12
Identities = 30/59 (50%), Positives = 39/59 (66%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGL+ E + +R F ++G IL + DK + KG+ F+TF
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF 72
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGL+ E + +R F ++G IL + DK + KG+ F+TF
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF 72
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 67.3 bits (157), Expect = 7e-12
Identities = 26/58 (44%), Positives = 41/58 (70%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI 73
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 398 AGEHTIN 418
H +N
Sbjct: 182 KTFHELN 188
Score = 57.6 bits (133), Expect = 6e-09
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +2
Query: 452 RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
R KIFVGGL S I++ E +N+F +FGTI V + +D + +GF FITF+S
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 172
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/49 (30%), Positives = 32/49 (65%)
Frame = +2
Query: 458 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
GK+F+GG+S + ++ ++ +F ++G ++ + D+T + +GF FI F
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 64.9 bits (151), Expect = 4e-11
Identities = 28/64 (43%), Positives = 41/64 (64%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 389 VMAA 400
+AA
Sbjct: 64 AIAA 67
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+ F+GGL+ SD +R+ F ++G ++ ++ DK + +GF FITF+
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFD 56
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 64.1 bits (149), Expect = 7e-11
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Score = 50.4 bits (115), Expect = 9e-07
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGL+ E DE+R +F +FG IL + DK + KG+ F+TF
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 64.1 bits (149), Expect = 7e-11
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Score = 50.4 bits (115), Expect = 9e-07
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGL+ E DE+R +F +FG IL + DK + KG+ F+TF
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 63.7 bits (148), Expect = 9e-11
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +2
Query: 197 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 377 SIDKVMAAGEHTIN 418
++DKV+ H +N
Sbjct: 86 AVDKVLQKTFHELN 99
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/50 (40%), Positives = 35/50 (70%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KIFVGGL+S +++ E + +F++FG I V + +D + +GF FI+++S
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDS 83
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 134 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 308 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGLS D ++ F+ FG + + D+ + +GF F++F
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 134 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 308 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGLS D ++ F+ FG + + D+ + +GF F++F
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 47.6 bits (108), Expect = 6e-06
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
KIFVGGL+ E D +R +F +FG I+ + DK + KG+ F+TF+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 61.3 bits (142), Expect = 5e-10
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 19/150 (12%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA--------- 370
RK+FV GL W+T L D F YGEI D +G+S+G+ FI+FK+
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 371 --PESIDKVMAAGE-HTINNXXXXXXXXXXRH-------GKIFVGGLSSEISDDEIRNFF 520
+ I M A + +I +H KI+V +S++I ++ FF
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 521 SEFGTILXVEMPFDKTKNQXKGFCFITFES 610
S FG I + DK + KGF + S
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRS 277
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
RK++V +S + ++L + F +GEI + D TGR +GFA V+++ ES K +
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 60.9 bits (141), Expect = 7e-10
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +2
Query: 455 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
H K+FVGGL+ E DE+R +F +FG IL + DK + KG+ F+TF
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGL+ E +RN+F +FG I+ + DK+ + KG+ F+TF
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGL+ E +RN+F +FG I+ + DK+ + KG+ F+TF
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+F+GGLS D +R+ F+ FG ++ ++ D+ + +GF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+F+GGLS D +R+ F+ FG ++ ++ D+ + +GF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KIFVGG+S + +R FS++G ++ ++ D+ + +GF F+TF S
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTS 84
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 194 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFK 212
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
IFV GL + + + ++ F +G I + DK + KGF F+ F++
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+F+GGLS + + +++ FS FG + V + +DK + +GF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 58.4 bits (135), Expect = 3e-09
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +2
Query: 194 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 370
E+ RD R +FV G W+TT + L+ F +YGEI +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
Query: 371 PESIDKVMAAGEHTINNXXXXXXXXXXRHGK 463
+ + + E + N + GK
Sbjct: 459 RKGAREALKRPEKRMYNRIVVCNLASEKPGK 489
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
IFV G + + + ++ F +G I + DK + KG+ F+ F++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGL+ E + ++ F +FG IL + DK + KG+ F+TF
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGL+ E + ++ F +FG IL + DK + KG+ F+TF
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGGL+ E + ++ F +FG IL + DK + KG+ F+TF
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 401 GEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGT-ILXVEMPFDKTK-N 574
++F+G + ++DE R + G + +E+ D T
Sbjct: 177 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTT 236
Query: 575 QXKGFCFITF 604
+ +GF F+ +
Sbjct: 237 RNRGFAFVLY 246
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 455 HG-KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
HG ++F+GGL ++ ++++R+ E G I V + D+ KG+ F+ F++
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKT 166
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = +2
Query: 122 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIX 301
I ++ +L GNA + + + L+V + T+ ++L++ F +GE+
Sbjct: 260 IDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT 319
Query: 302 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
I T P G R F F+ + S K +
Sbjct: 320 KI--VTPPGKGGKRDFGFVHYAERSSALKAV 348
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 58.0 bits (134), Expect = 5e-09
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF----------K 367
RKLF+ GL+ +TT + LR F +YG++ V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 368 AP-ESID-KVMAAGEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTIL 541
P + ID +V N KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 542 XVEMPFDKTKNQXKGFCFITFES 610
+ FDK + +GF +++
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKT 217
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
RK++V + ++ L +HF AYG++ + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 58.0 bits (134), Expect = 5e-09
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF----------K 367
RKLF+ GL+ +TT + LR F +YG++ V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 368 AP-ESID-KVMAAGEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTIL 541
P + ID +V N KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 542 XVEMPFDKTKNQXKGFCFITFES 610
+ FDK + +GF +++
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKT 217
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
RK++V + ++ L +HF AYG++ + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK 57
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+ FVGGL+ D + F+++G ++ ++ D+ + +GF F+TF+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK 57
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK 57
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+ FVGGL+ D + F+++G ++ ++ D+ + +GF F+TF+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK 57
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 57.6 bits (133), Expect = 6e-09
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 194 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 370
EA RD RK+FV GL WETT + L F YGEI V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 371 PESIDKVMAAGEHTINN 421
+ + + + I N
Sbjct: 155 RKGAKEALKEPKKRILN 171
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 57.6 bits (133), Expect = 6e-09
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 194 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 370
EA RD RK+FV GL WETT + L F YGEI V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 371 PESIDKVMAAGEHTINN 421
+ + + + I N
Sbjct: 155 RKGAKEALKEPKKRILN 171
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 57.6 bits (133), Expect = 6e-09
Identities = 24/68 (35%), Positives = 42/68 (61%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 398 AGEHTINN 421
+ H +++
Sbjct: 180 SNFHELSD 187
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +2
Query: 452 RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
R KIFVGGLSS +++E +++F FG V + D N+ +GF F+T++S
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +2
Query: 209 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
Score = 44.8 bits (101), Expect = 5e-05
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+FVGG++ E S++ ++ +FS +G +L + +K + +GF F+ F
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +2
Query: 143 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 316
+G+A GD + ++A D D +LFV L + T++EL +HF +G+I +++
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLV 293
Query: 317 TDPNTGRSRGFAFIVFKAPESIDKVM 394
D T RSRG A+I++ PE + M
Sbjct: 294 LDKETKRSRGIAYILYLIPECAARAM 319
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
KL V +++E T +ELR F +G+I S+ + N G+ G+AF+ F
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRL-PKKNIGQYAGYAFVEF 716
Score = 35.9 bits (79), Expect = 0.021
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 20/155 (12%)
Frame = +2
Query: 200 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIXSINVKTDPNTGR--SRGFAFIVF 364
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 365 KAPESIDKVMAAGEHTI------------NNXXXXXXXXXXRH---GKIFVGGLSSEISD 499
+ E+ V + T+ N + K+ V ++ E +
Sbjct: 623 DSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATK 682
Query: 500 DEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
E+R FS FG I + +P K Q G+ F+ F
Sbjct: 683 RELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEF 716
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 44.4 bits (100), Expect = 6e-05
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K+F+GG++ + +D +R F+++G ++ + D+ + +GF F+TF S
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTS 90
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+IFVGGLS ++++ ++ + F +G I ++ + + +GF FITF
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+IFVGGLS ++++ ++ + F +G I ++ + + +GF FITF
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 55.6 bits (128), Expect = 2e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 382
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+ FVGGL+ + I F+EFG + ++ D+ + KGF F+TF+
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFK 93
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+IFVGGLS E++D ++ FS FG IL ++ ++ + +GF FITF
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITF 55
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 55.2 bits (127), Expect = 3e-08
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Frame = +2
Query: 149 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 319
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 320 DPNTGRSRGFAFIVFKAPESIDKVMAA-----------GEHTINNXXXXXXXXXXRHGKI 466
D TG+ +G F+ + + D+ + A G + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 467 FVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
FVG L+ + ++ E+ F +FG + V + D+ + Q +G F+ + S
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSS 260
Score = 35.9 bits (79), Expect = 0.021
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
KLFVG L+ + T+KE+ + F +G + + + D +SRG F+ + + E+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKET 263
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 55.2 bits (127), Expect = 3e-08
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Frame = +2
Query: 149 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 319
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 320 DPNTGRSRGFAFIVFKAPESIDKVMAA-----------GEHTINNXXXXXXXXXXRHGKI 466
D TG+ +G F+ + + D+ + A G + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 467 FVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
FVG L+ + ++ E+ F +FG + V + D+ + Q +G F+ + S
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSS 260
Score = 35.9 bits (79), Expect = 0.021
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
KLFVG L+ + T+KE+ + F +G + + + D +SRG F+ + + E+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKET 263
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/48 (29%), Positives = 31/48 (64%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++FV GLS +++++++ F+ FG ++ + D+ + KGF F+T+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.8 bits (126), Expect = 4e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/49 (32%), Positives = 33/49 (67%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+ FVGGL+ +D++++ FS+FG ++ ++ D+ + +GF F+TF+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 54.8 bits (126), Expect = 4e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/49 (32%), Positives = 33/49 (67%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+ FVGGL+ +D++++ FS+FG ++ ++ D+ + +GF F+TF+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 54.8 bits (126), Expect = 4e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/49 (32%), Positives = 33/49 (67%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+ FVGGL+ +D++++ FS+FG ++ ++ D+ + +GF F+TF+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 54.8 bits (126), Expect = 4e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/49 (32%), Positives = 33/49 (67%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+ FVGGL+ +D++++ FS+FG ++ ++ D+ + +GF F+TF+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.8 bits (126), Expect = 4e-08
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
D K++ G L W T + L+D FG + V + NTGRSRGF FI F++ E++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 389 VMA 397
+A
Sbjct: 276 ALA 278
Score = 48.0 bits (109), Expect = 5e-06
Identities = 39/194 (20%), Positives = 82/194 (42%), Gaps = 24/194 (12%)
Frame = +2
Query: 101 NDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 277
+D + + ++ + G + ++ + +A G ++ +L+VG L + T EL
Sbjct: 78 DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG--EEGRLYVGNLPYTITSSELSQI 135
Query: 278 FGAYGEIXSINVKTDPNTGRSRGFAFIVF----KAPESID-----------------KVM 394
FG G + + + D T RSRGF F+ +A E++ +V
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP 195
Query: 395 AAGEHTI--NNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKT 568
GE+ + K++ G L ++ +++ F + +L ++ +++
Sbjct: 196 RGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERN 255
Query: 569 KNQXKGFCFITFES 610
+ +GF FI+FES
Sbjct: 256 TGRSRGFGFISFES 269
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 401 GEHTI 415
TI
Sbjct: 74 PNPTI 78
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
KI+VGGL + + NFF FG I+ V + D+ ++ +G+ F+TF+
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFK 62
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 54.4 bits (125), Expect = 6e-08
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
++ KLFVG + ++ +L F + + +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 389 VMAA--------GEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTILX 544
++ A G +++ K+FVG L +S+ E+++ FS++GTI
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 545 VEMPFDKTKNQXKGFCFITFES 610
+++ + KG F+ +E+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYET 155
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 54.4 bits (125), Expect = 6e-08
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
++ KLFVG + ++ +L F + + +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 389 VMAA--------GEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTILX 544
++ A G +++ K+FVG L +S+ E+++ FS++GTI
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 545 VEMPFDKTKNQXKGFCFITFES 610
+++ + KG F+ +E+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYET 155
Score = 31.5 bits (68), Expect = 0.46
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV--MA 397
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 398 AGEH 409
G H
Sbjct: 411 NGRH 414
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 54.0 bits (124), Expect = 7e-08
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 17/162 (10%)
Frame = +2
Query: 170 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 349
D +D A+ P RD R +F + + T++++ + F G++ + + D N+ RS+G
Sbjct: 154 DKKDEPEAD-PERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 211
Query: 350 AFIVF----KAPESI---------DKVMAAGEHTINNXXXXXXXXXXRHG----KIFVGG 478
+I F P +I VM N G K++VG
Sbjct: 212 GYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGN 271
Query: 479 LSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
L +S+ ++R F FG + V++P D Q KGF FI F
Sbjct: 272 LHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 54.0 bits (124), Expect = 7e-08
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK ++ +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 401 GEHTIN 418
IN
Sbjct: 78 STPIIN 83
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
K+FVGGL+ + + + + F ++G IL + DK + KG+ F+TF+
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFR 61
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
KIFVG L+ + D++R +F +FG ++ + + + KG+ FITF
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/77 (33%), Positives = 44/77 (57%)
Frame = +2
Query: 185 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 365 KAPESIDKVMAAGEHTI 415
K+ ++ + + +H++
Sbjct: 94 KSVGDANRCIRSLDHSV 110
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++V GLS +++ ++ + F++ G + V + D + +GF FI+ +S
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKS 95
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/77 (33%), Positives = 44/77 (57%)
Frame = +2
Query: 185 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 365 KAPESIDKVMAAGEHTI 415
K+ ++ + + +H++
Sbjct: 124 KSVGDANRCIRSLDHSV 140
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++V GLS +++ ++ + F++ G + V + D + +GF FI+ +S
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKS 125
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/70 (37%), Positives = 37/70 (52%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 389 VMAAGEHTIN 418
HTI+
Sbjct: 66 ACENPNHTID 75
Score = 35.5 bits (78), Expect = 0.028
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 452 RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
R KI+V GL + + ++F FG I+ ++ D + KGF F+TF
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTF 57
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 53.2 bits (122), Expect = 1e-07
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Frame = +2
Query: 113 AQDITTDNQLNGNAENG----GGDSQDHNS-------AEAPGRDDDRKLFVGGLSWETTD 259
+QD++ ++ G+A G G +S+ S AE P ++ KLFVG L+++
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNS 163
Query: 260 KELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINNXXXXX 436
+ L F G + V + T +SRGF F+ + E+ V + +N
Sbjct: 164 QALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV 223
Query: 437 XXXXXRHG-------------KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQ 577
R +++VG L ++ + + FSE G ++ + +D+ +
Sbjct: 224 NKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283
Query: 578 XKGFCFIT 601
+GF F+T
Sbjct: 284 SRGFGFVT 291
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K+FVG L+ +++ + F + GT+ E+ +++ +Q +GF F+T S
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 389 VMA 397
++
Sbjct: 269 ALS 271
Score = 44.4 bits (100), Expect = 6e-05
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 25/141 (17%)
Frame = +2
Query: 263 ELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH---- 409
+L D F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 410 --------------TINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTILXV 547
+N+ +H K++VG L D +RN FS+FGTI+
Sbjct: 183 YSVDMNPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVST 241
Query: 548 EMPFDKTKNQXKGFCFITFES 610
+ D+ + + F F++F S
Sbjct: 242 RVLHDRKTGRNRVFAFLSFTS 262
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +2
Query: 170 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 349
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 350 AFIVFKAPES 379
AF+ + E+
Sbjct: 326 AFLEYTTEEA 335
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
K+F+ GLS S+ +R F FG ++ V++ DK + KG+ F+ +
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEY 330
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 52.8 bits (121), Expect = 2e-07
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 8/163 (4%)
Frame = +2
Query: 146 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDP 325
G GGGD H + + L+VG L + TD +L D+F ++ S+ V D
Sbjct: 30 GIGVGGGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDA 81
Query: 326 NTGRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRH--------GKIFVGGL 481
T S G+ ++ + + +K M ++ N R G +FV L
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
Query: 482 SSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+ + + FS GTI+ ++ D Q +G+ F+ F++
Sbjct: 142 DKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDT 183
Score = 45.2 bits (102), Expect = 3e-05
Identities = 25/59 (42%), Positives = 33/59 (55%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA 284
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +2
Query: 179 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 358
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 359 VFKAPESIDKVM 394
F A +V+
Sbjct: 374 AFSAASEASRVL 385
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 52.8 bits (121), Expect = 2e-07
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Frame = +2
Query: 134 NQLNGNAENGGGDSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIXSIN 310
N+LN A NG ++ + R +F+ L K L + F A+G I S
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 311 VKTDPNTGRSRGFAFIVFKAPE----SIDKV--MAAGEHT------INNXXXXXXXXXXR 454
V DP +G+S+G+ F+ + E +IDK+ M + ++ +
Sbjct: 164 VAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 455 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++V LS +SD+E+ F EFG + D + + KGF F+ FE+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFEN 273
Score = 50.4 bits (115), Expect = 9e-07
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +2
Query: 194 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 374 ESIDKVM 394
E + +
Sbjct: 378 EEATRAI 384
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++V L ++DD++R F+ FGTI ++ D + +G F+ F +
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS-GVSRGSGFVAFST 376
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
L+ G L + T+ L D F + S+ V D N RS G+A+I F P + M A
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 404 EHT--------INNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 559
+T I G IF+ L + I + + FS FGTIL ++
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 560 DKTKNQXKGFCFITFE 607
D T + KG+ F+ FE
Sbjct: 170 DVT-GRSKGYGFVQFE 184
Score = 50.8 bits (116), Expect = 7e-07
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES----IDKV 391
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES IDK+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 392 --MAAGEHTI--------NNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTIL 541
M + + R ++V L EI +DE+R F +FG I
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVIS 256
Query: 542 XVEMPFDKTKNQXKGFCFITFE 607
+ D++ N + F F+ FE
Sbjct: 257 SAVVMRDQSGNS-RCFGFVNFE 277
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
L++ L D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +2
Query: 146 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 308 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
V D ++GRS+GF F+ + + + K +
Sbjct: 279 RVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = +2
Query: 110 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 289
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 290 GEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
G + + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+++VG LS + D + N F+E G ++ + +D+ + KGF F+T S
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 299
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +2
Query: 146 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 308 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
V D ++GRS+GF F+ + + + K +
Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = +2
Query: 110 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 289
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 290 GEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
G + + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+++VG LS + D + N F+E G ++ + +D+ + KGF F+T S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 307
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 50.8 bits (116), Expect = 7e-07
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Frame = +2
Query: 188 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 368 APESIDKVMAAGEHTINNXXXXXXXXXXR--------HGKIFVGGLSSEISDDEIRNFFS 523
PE + M + + R G +F+ L + I + + FS
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 524 EFGTILXVEMPFDKTKNQXKGFCFITFE 607
FGTIL ++ D + KG+ F+ FE
Sbjct: 154 SFGTILSCKVAMD-VVGRSKGYGFVQFE 180
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +2
Query: 176 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAF 355
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 356 IVFKAPES 379
+ F +PE+
Sbjct: 270 VNFVSPEA 277
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
L++ L D++L++ F YG + S V + + G SRGF F+ + PE
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +2
Query: 185 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 365 KAPESIDKVMAA 400
+ P D AA
Sbjct: 424 QDPSVTDIACAA 435
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+IFVGGL ++ +IR FG + + D+ KG+ F ++
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQ 424
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 50.8 bits (116), Expect = 7e-07
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Frame = +2
Query: 191 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 368 APESIDKVMAA--------GEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFS 523
E DKV+ + G + K+FVG L +S+ E+++ FS
Sbjct: 62 TREDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFS 121
Query: 524 EFGTILXVEMPFDKTKNQXKGFCFITFES 610
E+GTI +++ + KG F+ +ES
Sbjct: 122 EYGTIKDLQI-LRGSLQTSKGCLFLKYES 149
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
LF+ + E D+EL F +G++ S V D TG S+ F FI +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISY 378
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 50.4 bits (115), Expect = 9e-07
Identities = 30/150 (20%), Positives = 66/150 (44%), Gaps = 3/150 (2%)
Frame = +2
Query: 170 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 349
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 350 AFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEF 529
AF+ F E + + + + N + +FVG + + + +R +
Sbjct: 258 AFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHY 317
Query: 530 G--TILXVEMPFDKTK-NQXKGFCFITFES 610
G + + + D N +G+ F+ F S
Sbjct: 318 GVENMDDITLVEDSNNVNMNRGYAFLEFSS 347
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
+ +F+ GL ++ +RD YG++ + + + + R + F F+ F E+
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA 444
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 50.4 bits (115), Expect = 9e-07
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K++V GLS ++D +R+ F +FG ++ + M DK N+ KGF F+ +E+
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYET 127
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 389 VM 394
+
Sbjct: 234 AL 235
Score = 40.7 bits (91), Expect = 7e-04
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 12/142 (8%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 394
KL+ G L + L + + V + +TG+SRGFAF+ E + ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 395 AAGEHTINNXXXXXXXXXXR----------HGKIFVGGLSSEISDDEIRNFFSEFGTILX 544
G + + K+FVG LS ++ + + F E G ++
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 545 VEMPFDKTKNQXKGFCFITFES 610
+ FD + +G+ F+ + S
Sbjct: 206 ARVVFDGDTGRSRGYGFVCYSS 227
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/130 (18%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 401 GEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGT-ILXVEMPFD-KTKN 574
+T ++F+G + + +I+ + G + VE+P + +
Sbjct: 153 LNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMG 212
Query: 575 QXKGFCFITF 604
+ +GF FI +
Sbjct: 213 RNRGFAFIEY 222
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 455 HG-KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
HG ++++GG+ ++ ++ +++ F G + V + +K KG+ F+TF S
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRS 142
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Score = 33.9 bits (74), Expect = 0.085
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K+++GGLS + +++ FS F + + +K + +G+ F+ F S
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFIS 81
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 167 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 334
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 335 RSRGFAFIVFK 367
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
Score = 39.9 bits (89), Expect = 0.001
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Frame = +2
Query: 200 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIXSIN-VKTDPNTGRSRGFAFIVFKA 370
PG D R ++ G + + T+ L++ F + G I S ++ D + S GF +
Sbjct: 55 PGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS---SYGFVHYFDRR 111
Query: 371 PESIDKVMAAGEHTINNXXXXXXXXXX-------RHGKIFVGGLSSEISDDEIRNFFSEF 529
S+ + G H H IFVG LS E++D + + FS F
Sbjct: 112 CASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF 171
Query: 530 GTILXVEMPFDKTKNQXKGFCFITFES 610
+ + +D+ + +GF F++F +
Sbjct: 172 NSCSDARVMWDQKTGRSRGFGFVSFRN 198
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Frame = +2
Query: 137 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
++ AE G SQD + SA D R ++VG + + T +E++ HF + G + +
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 132
Query: 308 NVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTIN 418
+ TD G+ +GFA++ F E++ + E ++
Sbjct: 133 TILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELH 168
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
I+VG + + +E++ F GT+ V + DK Q KGF ++ F
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEF 150
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 370
RK+FV GL W+T + L + F YGEI D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KI+V + +E+ ++ FFS+FG I + DK + KGFC ++S
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 455 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
H KIFV GL + + + F ++G I + FDK + KG+ FI ++S
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
+K++V + E ++L F +GEI + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 370
RK+FV GL W+T + L + F YGEI D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KI+V + +E+ ++ FFS+FG I + DK + KGFC ++S
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 455 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
H KIFV GL + + + F ++G I + FDK + KG+ FI ++S
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
+K++V + E ++L F +GEI + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 370
RK+FV GL W+T + L + F YGEI D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KI+V + +E+ ++ FFS+FG I + DK + KGFC ++S
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 455 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
H KIFV GL + + + F ++G I + FDK + KG+ FI ++S
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
+K++V + E ++L F +GEI + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 21/150 (14%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 394
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 395 ---AAGEH--TINNXXXXXXXXXXR--------------HGKIFVGGLSSEISDDEIRNF 517
A G+ TI R + ++++G L+ + ++ +IR
Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281
Query: 518 FSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
FS+ I V + +K + KG+ + F+
Sbjct: 282 FSDC-VINSVRLGKNKETGEFKGYAHVDFK 310
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K++VGG+ + ++DEIR++F G I+ V+ G FITF++
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDT 211
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 382
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSV 315
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 40.7 bits (91), Expect = 7e-04
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
++VGG+ ++++ ++ FS++G I+ V + DK + KGF F+ +E
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYE 85
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 48.8 bits (111), Expect = 3e-06
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 404 EHTINNXXXXXXXXXXR-----------HGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 550
H+ R ++V L S I+ + F FG+IL +
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCK 142
Query: 551 MPFDKTKNQXKGFCFITFES 610
+ + Q KGF F+ F++
Sbjct: 143 VV--EENGQSKGFGFVQFDT 160
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/74 (37%), Positives = 37/74 (50%)
Frame = +2
Query: 173 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 352
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 353 FIVFKAPESIDKVM 394
F+ F PE+ K M
Sbjct: 246 FVNFCNPENAKKAM 259
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
L+V LS + LR+ FG YG+I S V N GRS+GF F+ F
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
Score = 37.1 bits (82), Expect = 0.009
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 12/139 (8%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 400
L+V L T L F +G I S V + G+S+GF F+ F +S +A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 401 ------GEHT-----INNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTILXV 547
G+ IN ++V L ++DD + FS++GT+ V
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 548 EMPFDKTKNQXKGFCFITF 604
+ D + +GF F+ F
Sbjct: 232 VVMRD-GMGRSRGFGFVNF 249
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KIFVGGLS + ++ F FG I+ + D+ +GF F+T++S
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDS 86
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 391
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 392 MA 397
MA
Sbjct: 175 MA 176
Score = 37.9 bits (84), Expect = 0.005
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 389 V--------MAAGEHTIN-NXXXXXXXXXXRHG---KIFVGGLSSEISDDEIRNFFS-EF 529
M E T N G IFVG L+ +++D ++ F +
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHY 140
Query: 530 GTILXVEMPFDKTKNQXKGFCFITF 604
++ ++ D + + KG+ F+ F
Sbjct: 141 SSVRGAKVVTDPSTGRSKGYGFVKF 165
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 48.0 bits (109), Expect = 5e-06
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDD-GSFKGYGHIEFASPEEAQKALE 442
Query: 398 AGEHTI----------NNXXXXXXXXXXRHGK------IFVGGLSSEISDDEI----RNF 517
+ N R G+ I+V G SS + +DEI R+
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 518 FSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
FS+ G + V +P D+ +GF +I S
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 158 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTD----KELRDHFGAYGEIXSINVKTDP 325
N G ++ N R ++V G S + KELR HF GE+ ++V TD
Sbjct: 459 NERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDR 518
Query: 326 NTGRSRGFAFI 358
TG SRGFA+I
Sbjct: 519 ETGASRGFAYI 529
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/88 (23%), Positives = 37/88 (42%)
Frame = +2
Query: 131 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSIN 310
D G + G + G +++VG LSW D L F G++
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 311 VKTDPNTGRSRGFAFIVFKAPESIDKVM 394
V D ++GRS+GF F+ + + + + +
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
D KLFVG L + +L F + G + + V D TGRSRGF F+ S+ +V
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVE 146
Query: 395 AAGE 406
AA +
Sbjct: 147 AAAQ 150
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+++VG LS + D + + FSE G ++ + +D+ + KGF F+T++S
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDS 254
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K+FVG L + ++ F G + VE+ +DK + +GF F+T S
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 48.0 bits (109), Expect = 5e-06
Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Frame = +2
Query: 188 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 361
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 362 FK-------APESIDKVMAAGEHTINNXXXXXXXXXX---RHGKIFVGGLSSEISDDEIR 511
F+ A ++++ + A + ++ +++ L +++S+D +R
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 512 NFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
F+EFG I+ + + D+ + +G+ F+ F++
Sbjct: 219 EKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDN 250
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 391
++V ++ T++ELR HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAV 361
Score = 39.1 bits (87), Expect = 0.002
Identities = 28/136 (20%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
L+VG L T+ L D F + + S+ + D ++GRS + + F + + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 404 EHTINNXXXXXXXXXXRH--------GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 559
+++ N R G +FV L +++ +++ F +FG I+ ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA- 144
Query: 560 DKTKNQXKGFCFITFE 607
+ +G+ F+ FE
Sbjct: 145 TLEDGKSRGYGFVQFE 160
Score = 38.7 bits (86), Expect = 0.003
Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF-------KAPESI 382
L++ L + ++ LR+ F +G+I S+ + D N RG+AF+ F +A E++
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 383 D------KVMAAG--EHTINNXXXXXXXXXXRH---------GKIFVGGLSSEISDDEIR 511
+ K + G + +H I+V ++ ++++E+R
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 512 NFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
FS+ GTI ++ D+ K + KGF F+ F +
Sbjct: 322 KHFSQCGTITSTKLMCDE-KGKSKGFGFVCFST 353
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +2
Query: 200 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 380 IDKVMA 397
K +A
Sbjct: 110 SAKGIA 115
Score = 36.7 bits (81), Expect = 0.012
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FV GLS + + +R F++FG + ++ D+ KGF F+ +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 47.6 bits (108), Expect = 6e-06
Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 15/184 (8%)
Frame = +2
Query: 92 MANNDNFAQDIT-TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKEL 268
++ N+A++ D + G + + + P ++ KLFVG L ++ + L
Sbjct: 70 VSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQAL 129
Query: 269 RDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNXXXXXXXX 445
F G + V + +T +SRGF F+ E +K V +N
Sbjct: 130 AMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
Query: 446 XXRHG-------------KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKG 586
R +I+VG L ++ + FSE G ++ + D+ + +G
Sbjct: 190 APRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 249
Query: 587 FCFI 598
F F+
Sbjct: 250 FGFV 253
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K+FVG L ++ + F + GT+ E+ +++ +Q +GF F+T +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMST 163
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K+F+GGLS ++ + FS+ G ++ ++ D+ ++ KGF F+TF S
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +2
Query: 167 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 346
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 347 FAFIVFKAPESIDK 388
FAF+ + + ++
Sbjct: 115 FAFVTMSSLKDAER 128
Score = 31.1 bits (67), Expect = 0.60
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 122
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 47.2 bits (107), Expect = 9e-06
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 23/166 (13%)
Frame = +2
Query: 176 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAF 355
+D EA D R +F ++ T++++ + F G++ + + D + RSRG +
Sbjct: 168 EDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGY 227
Query: 356 IVF----KAPESI---------DKVMAAGEHTINNXXXXXXXXXXRHG----------KI 466
+ F P +I VM N G ++
Sbjct: 228 VEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRL 287
Query: 467 FVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+VG L +S+D++R F FG++ V++P D+T KGF F+ F
Sbjct: 288 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDET-GLCKGFGFVQF 332
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 188 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI-NVKTDPNTGRSRGFAFIVF 364
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 365 KAPESID 385
+ E+ D
Sbjct: 162 DSFEASD 168
Score = 45.2 bits (102), Expect = 3e-05
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Frame = +2
Query: 164 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 343
G + +SAE R+ D ++VGGL + +++ L + F G + ++ V D T +
Sbjct: 10 GANLLGQHSAE---RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 344 GFAFIVFKAPESID---KVMAA----GEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDD 502
+ FI +++ E D KV+ G+ N +F+G L ++ +
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
Query: 503 EIRNFFSEFGTIL-XVEMPFDKTKNQXKGFCFITFES 610
+ + FS FG I ++ D +GF FI+++S
Sbjct: 127 LLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS 163
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 179 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 358
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 359 VFKAPESIDKVMA 397
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFE 77
Score = 35.9 bits (79), Expect = 0.021
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++V L+ +DD+++N F E+G I + D + + KGF F+ FE+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFEN 78
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++V L ISD++++ FS FGT+ ++ D KG F+ F
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAF 179
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 370
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+++VG LS +DD +R FS +G ++ + D+ ++ +GF F+T+ S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+FV G+S +++ + FS++G +L V++ DK + + KGF ++TF S
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSS 71
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 31.1 bits (67), Expect = 0.60
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 185 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 352
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 353 FIVFK 367
F+ F+
Sbjct: 189 FVSFR 193
Score = 40.7 bits (91), Expect = 7e-04
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Frame = +2
Query: 200 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIXSIN-VKTDPNTGRSRGFAFIVFKA 370
PG D R ++VG + + T+ L++ F + G + S ++ D + S GF +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS---SYGFVHYFDRR 107
Query: 371 PESIDKVMAAGEHTINNXXXXXXXXXX-------RHGKIFVGGLSSEISDDEIRNFFSEF 529
++ + G H H IFVG LS E++D + FS F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVF 167
Query: 530 GTILXVEMPFDKTKNQXKGFCFITFES 610
+ + +D+ + +GF F++F +
Sbjct: 168 SSCSDARVMWDQKTGRSRGFGFVSFRN 194
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +2
Query: 212 DDRKLFVGG----LSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
D++K+FV G LS + LR+HF + GEI +++V D +TG S+G A++ F
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 41.1 bits (92), Expect = 6e-04
Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 28/163 (17%)
Frame = +2
Query: 200 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF----- 364
P + LF LS+ ++ + F GE+ + T+ + G RGF + F
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 365 --KAPE-----------SIDKVMAAGEH------TINNXXXXXXXXXXRHGKIFVGGLSS 487
KA E +D GE T + KIFV G +
Sbjct: 351 AQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDA 410
Query: 488 EISDDEIRN----FFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+S+D+I+N FS G I V +P D+ KG ++ F
Sbjct: 411 SLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+F LS I ++ NFF E G ++ V ++ +GF + F S
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFAS 347
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 391
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 392 MAAGEHTIN 418
+ E ++
Sbjct: 149 LQLNESELH 157
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FVG + + +E++ F GT+ V + DK Q KGF ++ F
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEF 139
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 227 FVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 394
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +2
Query: 467 FVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
FV GL + + ++ + FS+FG ++ ++ +D+ + + F F+TFE
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFE 56
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 44.8 bits (101), Expect = 5e-05
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 16/162 (9%)
Frame = +2
Query: 167 GDSQDHNSAEAPGRDDDRK-LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 343
G Q ++ PG D K L++G L + + F GE S V + TG+S
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 344 GFAFIVFKAPESIDKV--------MAAGEHTINNXXXXXXXXXXRHGK------IFVGGL 481
G+ FI F + ++V M + E T R IFVG L
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDL 161
Query: 482 SSEISDDEIRNFFSE-FGTILXVEMPFDKTKNQXKGFCFITF 604
+ E++D + + F +G++ ++ D+T + KG+ F+ F
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 41.9 bits (94), Expect = 3e-04
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMP 556
IFVGGL + ++DDE+++ F +FG +L V++P
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Score = 37.5 bits (83), Expect = 0.007
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 176 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 352
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 353 FIVFKA 370
KA
Sbjct: 301 QYANKA 306
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
D K++VG L+ T + L + F G++ S V P T +S GF F+ F + E ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 389 VMAA 400
+ A
Sbjct: 234 AIVA 237
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = +2
Query: 170 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 349
++++ +A P + R++++G + T+++L +G + + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 350 AFIVFKAPESIDKVM 394
F K+ E + V+
Sbjct: 120 GFATMKSVEDANAVV 134
Score = 36.3 bits (80), Expect = 0.016
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
K++VG L+ ++ + + N FSE G ++ ++ ++ GF F+TF S
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSS 227
Score = 31.9 bits (69), Expect = 0.34
Identities = 10/50 (20%), Positives = 28/50 (56%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++++G + ++++++ E G + V++ +DK + + F F T +S
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
+LFV LS TTD+ LR F +G+I + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
++FV LS+ +D +R FS FG I + D + KGF FITF+S
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDS 57
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/48 (20%), Positives = 26/48 (54%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+FVG + + +++++R E G ++ + D+ + KG+ F ++
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYK 58
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.4 bits (100), Expect = 6e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 167 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSI----NVKTD 322
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 323 PNTGRSRGFAFIVFK 367
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/61 (32%), Positives = 38/61 (62%)
Frame = +2
Query: 182 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 361
+N A G D + LFV L++E+++ +++ F +YG I +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 362 F 364
+
Sbjct: 186 Y 186
Score = 36.3 bits (80), Expect = 0.016
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FV L+ E S+ +I+ F +G I V + D+ N+ KG+ FI +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.0 bits (99), Expect = 8e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 185 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 352
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 353 FIVFK 367
F+ F+
Sbjct: 184 FVSFR 188
Score = 39.1 bits (87), Expect = 0.002
Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 9/146 (6%)
Frame = +2
Query: 200 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
PG D R ++VG + + T+ L++ F G + S + + S GF +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS--SYGFVHYFDRRS 103
Query: 374 ESIDKVMAAGEHTINNXXXXXXXXXX-------RHGKIFVGGLSSEISDDEIRNFFSEFG 532
+ + G H H IFVG LS E++D + FS +
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYP 163
Query: 533 TILXVEMPFDKTKNQXKGFCFITFES 610
T + +D+ + +GF F++F +
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFVSFRN 189
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 170 DSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 346
D +D + EAP + ++VG L+ E + +L HF + G V + R +G
Sbjct: 243 DGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKG 298
Query: 347 FAFI 358
F F+
Sbjct: 299 FGFV 302
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 44.0 bits (99), Expect = 8e-05
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 19/159 (11%)
Frame = +2
Query: 191 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 368 APESIDKVMAA------------------GEHTINNXXXXXXXXXXRHGKIFVGGLSSEI 493
E DKV+ + + + H K+FVG L +
Sbjct: 62 TREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEH-KLFVGMLPKNV 120
Query: 494 SDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
S+ E+++ FSE+GTI +++ + KG F+ +ES
Sbjct: 121 SETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYES 158
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
LF+ + E D+EL F +G++ S V D TG S+ F FI +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISY 387
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
+ KLFVG L ++ E++ F YG I + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 395 AA--GEH 409
A G H
Sbjct: 167 EALNGRH 173
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 200 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +K +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 380 IDKVM 394
K +
Sbjct: 70 AHKAV 74
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 200 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 379
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +K +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 380 IDKVM 394
K +
Sbjct: 70 AHKAV 74
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 203 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 382
G + ++FVGGL + T+ ++R+ ++G + ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 383 DKVMAA 400
D AA
Sbjct: 414 DIACAA 419
Score = 34.7 bits (76), Expect = 0.049
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 203 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 382
G + ++FVGGL + T+ ++R+ ++G + ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 383 DKVMAA 400
D AA
Sbjct: 414 DIACAA 419
Score = 34.7 bits (76), Expect = 0.049
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 203 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 382
G + ++FVGGL + T+ ++R+ ++G + ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 383 DKVMAA 400
D AA
Sbjct: 414 DIACAA 419
Score = 34.7 bits (76), Expect = 0.049
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 194 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK- 367
E DD +R LF+ L ++ T +E++ F +GE+ S+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 368 APESIDKVMAA 400
A S+ + AA
Sbjct: 612 ADASVAAISAA 622
Score = 35.5 bits (78), Expect = 0.028
Identities = 17/77 (22%), Positives = 34/77 (44%)
Frame = +2
Query: 164 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 343
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 344 GFAFIVFKAPESIDKVM 394
GFAF+ F E +++ +
Sbjct: 62 GFAFVKFALQEDVNRAI 78
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+ V GL I++ ++ FSE G + + +K ++ +GF F+ F
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKF 68
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 43.2 bits (97), Expect = 1e-04
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 15/158 (9%)
Frame = +2
Query: 176 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAF 355
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 356 IVFKAPESIDKVMA--AGEHTINN---------XXXXXXXXXXRHG---KIFVGGLSSEI 493
+ F + + ++V+ +G N+ +G +FVG LS ++
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 494 SDDEIRNFFSE-FGTILXVEMPFDKTKNQXKGFCFITF 604
+D + FS+ + ++ ++ D + KG+ F+ F
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 565
IFVGG+ ++ D+++R FS+FG ++ V++P K
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK 356
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 158 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 334
+G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
IFV + + D + F++FG +L + D Q G +I F
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/74 (29%), Positives = 41/74 (55%)
Frame = +2
Query: 167 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 346
G + + + E+P + + L+VGGL+ ++++RD F A+GEI SI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 347 FAFIVFKAPESIDK 388
AF+ + + E +K
Sbjct: 265 CAFVTYTSREGAEK 278
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
LFVG LS TT+ LR+ YG I ++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 404 EHTI 415
H++
Sbjct: 126 HHSL 129
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Frame = +2
Query: 173 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 334
S+D S + GR ++ + V G+ ET ++++ + FG +GEI ++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 335 RSRGFAFIVFKAPESIDKVMAA 400
+G+A I ++ E ++A
Sbjct: 134 YVKGYALIEYEKKEEAQSAISA 155
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
I V G+ E +++I N F +FG I + + D+ KG+ I +E
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYE 144
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 137 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIXS 304
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 305 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTIN 418
+ + D G+ +GFA++ F E++ + + E ++
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELH 154
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++VG + + +E++ F GT+ V + DK Q KGF ++ F
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEF 136
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 137 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIXS 304
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 305 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTIN 418
+ + D G+ +GFA++ F E++ + + E ++
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELH 154
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++VG + + +E++ F GT+ V + DK Q KGF ++ F
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEF 136
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 206 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 386 KVM 394
+ +
Sbjct: 269 RAI 271
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 470 VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
V LS + + ++ F FG + V + D+ +GF F+ F S
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVS 263
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 42.3 bits (95), Expect = 2e-04
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHF--GAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
+++ ++VG L + L F G EI S+ V + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 386 KVMAAGEHT----------INNXXXXXXXXXXRHG----KIFVGGLSSEISDDEIRNFFS 523
KV+ T +N + IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 524 E-FGTILXVEMPFDKTKNQXKGFCFITF 604
E + ++ ++ D + KG+ F+ F
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 391
D +FVG LS + +D L + F Y + + V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 392 M 394
M
Sbjct: 256 M 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 42.3 bits (95), Expect = 2e-04
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHF--GAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
+++ ++VG L + L F G EI S+ V + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 386 KVMAAGEHT----------INNXXXXXXXXXXRHG----KIFVGGLSSEISDDEIRNFFS 523
KV+ T +N + IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 524 E-FGTILXVEMPFDKTKNQXKGFCFITF 604
E + ++ ++ D + KG+ F+ F
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 391
D +FVG LS + +D L + F Y + + V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 392 M 394
M
Sbjct: 256 M 256
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 565
IFVGGL S ++D++++ F+EFG I+ V++P K
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK 339
Score = 37.9 bits (84), Expect = 0.005
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +2
Query: 128 TDNQLNGNAENGGGDSQDHNSAEAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIXS 304
T + NG + GG + + P D + +FVGGL TD++L+ F +GEI S
Sbjct: 275 TPRKTNGYQQQGG--YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVS 332
Query: 305 INVKTDPNTGRSRGFAFIVFK--APESIDKV 391
+ + G+ GF V + A E+++K+
Sbjct: 333 VKIP----VGKGCGFVQFVNRPNAEEALEKL 359
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +2
Query: 173 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 352
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 353 FIVFKAPESIDKVMAAGEH 409
FI F ++ +M EH
Sbjct: 343 FIDFPTVDAARTMMDRIEH 361
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
L V GL + ++ LR F + I + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 404 EHT 412
T
Sbjct: 520 NRT 522
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+ V GLS + +++++ +E+G + V + ++ +GF FI F
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDF 346
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 173 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 352
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 353 FIVFKAPE 376
F+ + E
Sbjct: 139 FVTMASGE 146
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 197 APGRDDDRKLFVGGLSWETTDKELRDHFGA--YGEIXSINVKTDPNTGRSRGFAFIVFKA 370
APG D KL+V L+W+ LR+ F A + + + V DP GRS G+ F+ F
Sbjct: 188 APG-DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFAT 245
Query: 371 PESIDKVM 394
E + +
Sbjct: 246 REEAENAI 253
Score = 31.1 bits (67), Expect = 0.60
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = +2
Query: 383 DKVMAAGEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFD 562
+K +A E T K+FV L +S ++I F + GT+ VE+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 563 KTKNQXKGFCFITFES 610
K + +GF F+T S
Sbjct: 130 K-DGKNRGFAFVTMAS 144
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 565
IFVGGL S ++D++++ FSEFG I+ V++P K
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK 341
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 391
D +FVG L+ + +D L + F Y + + V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 392 M 394
M
Sbjct: 258 M 258
Score = 37.9 bits (84), Expect = 0.005
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 128 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
T + NG + GG + G + +FVGGL TD++L+ F +GEI S+
Sbjct: 277 TPRKTNGYQQQGGY-MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
Query: 308 NVKTDPNTGRSRGFAFIVFK--APESIDKV 391
+ G+ GF V + A E+++K+
Sbjct: 336 KIP----VGKGCGFVQFVNRPNAEEALEKL 361
Score = 34.3 bits (75), Expect = 0.065
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Frame = +2
Query: 293 EIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNXXXXXXXXXX----- 451
EI S+ V + + G S G+ F+ F++ + DKV+ G N
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGE 189
Query: 452 ----RHG---KIFVGGLSSEISDDEIRNFFSE-FGTILXVEMPFDKTKNQXKGFCFITF 604
+G IFVG L+ ++SD + FSE + ++ ++ D + KG+ F+ F
Sbjct: 190 KRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 248
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.9 bits (94), Expect = 3e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 565
+FVGGL + ++DD ++N FS++G I+ V++P K
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 37.5 bits (83), Expect = 0.007
Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Frame = +2
Query: 188 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 368 APESIDKVMAAGEH----TINNXXXXXXXXXXRHG---------KIFVGGLSSEISD-DE 505
+ + ++V+ + + + G IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 506 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+ F + + ++ ++ D+ + KG+ F+ F
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 161 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 334
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 41.9 bits (94), Expect = 3e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 565
+FVGGL + ++DD ++N FS++G I+ V++P K
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 37.5 bits (83), Expect = 0.007
Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Frame = +2
Query: 188 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 368 APESIDKVMAAGEH----TINNXXXXXXXXXXRHG---------KIFVGGLSSEISD-DE 505
+ + ++V+ + + + G IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 506 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+ F + + ++ ++ D+ + KG+ F+ F
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 161 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 334
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +2
Query: 167 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 346
G + + + E+P R L+VGGL+ ++++RD F A+GEI SI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 347 FAFIVFKAPESIDK 388
AF+ + E +K
Sbjct: 265 CAFVTYTTREGAEK 278
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
L+VG L+ ETT+ +L + FG YG+I I V + SRGFAFI ++ +++ +AA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAK 70
Query: 404 E 406
E
Sbjct: 71 E 71
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTI 538
++VGG+ +S D++ FS+FG I
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSAD 61
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 40.7 bits (91), Expect = 7e-04
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 19/167 (11%)
Frame = +2
Query: 161 GGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 334
GG + S A D KL+V +S T+ ++R F YG + I + D TG
Sbjct: 89 GGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTG 148
Query: 335 RSRGFAFIVFKAPESIDKVMAA--------GE---------HTINNXXXXXXXXXXRHGK 463
+ FI +K E + +AA GE + K
Sbjct: 149 ERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPK 208
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++V L+ + + E+ FS +G I + M D K +G+ F+ F
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMK-ICRGYAFVQF 254
Score = 34.7 bits (76), Expect = 0.049
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 212 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
D+ KL+V L+ +TT E+ + F YG I I + D + RG+AF+ F E
Sbjct: 205 DNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHF-GAYGEIXSINVKTDPNTGRSRGFAFIVF 364
D +FVG L+ + +D L + F G Y + V D NTGRS+G+ F+ F
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +2
Query: 137 QLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 316
Q NG+ N + + G ++ +FVGGL + T+++L F +GE+ S+ +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 317 TDPNTG 334
G
Sbjct: 360 VGKGCG 365
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/34 (38%), Positives = 26/34 (76%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 565
IFVGGL ++++++++ FS+FG ++ V++P K
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK 362
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
LFVG L W TTD EL YG + + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FVG L +D E+ ++G + V+ +K + KG+C + F
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++VGGL+ E+++ + F FG I V+ P D+ + + F F+TF
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
Score = 34.3 bits (75), Expect = 0.065
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
L+VGGL+ E + L F +G+I + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
+++G +S+ TT+++L + F GEI I + D NT GF F++F + E +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+++G +S +++++ FS G I + M DK GFCF+ F S
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYS 84
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 194 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 322
E P + + L+VGGL+ ++++ DHF AYGE+ SI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 167 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 346
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 347 FAFIVFKAPESIDKVM 394
F F+ F + E + +
Sbjct: 217 FGFVSFVSREDAQRAI 232
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 470 VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
V LS + ++ F FG + + D+ + +GF F++F S
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVS 224
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 404 EHTINN 421
+ I N
Sbjct: 119 DAKILN 124
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 179 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAF 355
+ AE P + +FVG L+ + TD L + F A Y + V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 356 IVFKAPES 379
+ F A ES
Sbjct: 220 VRF-ADES 226
Score = 34.3 bits (75), Expect = 0.065
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 565
IFVG + +++D++++ F +FG ++ V++P K
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK 313
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 334
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
KI V L S+D ++ FS FG I V++ D+ + KG+ FI F S
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTS 90
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
LFVG L W TTD E+ YG + I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+FVG L +D EI + S++G + ++ ++ + KG+C + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +2
Query: 173 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 352
S+DH S+ G L + L + +LRD F +G + I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 353 FIVFKAPESIDKVMAAGEHTI 415
F+ ++ E + M H +
Sbjct: 92 FVKYRYAEDAAEAMKRMNHKV 112
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 146 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 322
G GGGD P R + ++ V GL + ++L+DH GE+ V D
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRD 154
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 146 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 322
G GGGD P R + ++ V GL + ++L+DH GE+ V D
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRD 154
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 455 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
HG + V + + +E+R F FG + V +P D Q +GF F+ F
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
Score = 34.7 bits (76), Expect = 0.049
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 173 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 349
S+DH S + G + KL++ L + ++++++ F GE+ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 350 AFIVF 364
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 173 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 349
S+DH S + G + KL++ L + ++++++ F GE+ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 350 AFIVF 364
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 173 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 349
S+DH S + G + KL++ L + ++++++ F GE+ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 350 AFIVF 364
A +V+
Sbjct: 131 AEVVY 135
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/97 (18%), Positives = 42/97 (43%)
Frame = +2
Query: 314 KTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRHGKIFVGGLSSEI 493
+ +PN +R + KAPES + + ++ K+++ L +
Sbjct: 40 RNNPNRKSTRSAPYQSAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGV 99
Query: 494 SDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+++I+ F+E G + + FD++ + KG + +
Sbjct: 100 MNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVY 135
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +2
Query: 164 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 343
GG ++ P ++ L++G + + E+ F +G + + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 344 GFAFIVFKAPESIDKVMAAG 403
F FI F+ PE + +AAG
Sbjct: 102 HFGFIQFEDPEVAE--IAAG 119
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFE 607
+++G + + EI FFS+FGT+ V + +K + K F FI FE
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFE 109
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 173 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 322
S ++++ AP R D ++ V GL + ++L+DH G++ V D
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPD 143
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +2
Query: 164 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 343
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 344 GFAFIVFKAPESI 382
G+ F+ F P +
Sbjct: 179 GYGFVSFLNPADL 191
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++F G L +E++DD + F+ F T ++ DK + KG+ F++F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 194 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 374 ESIDKVM 394
+ K +
Sbjct: 295 DETKKAL 301
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 452 RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
R +FV LS + I NFF + G ++ V + + T + G F+ F S
Sbjct: 357 RKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHT-GKHVGCAFVEFGS 408
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 108
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 127
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 31.1 bits (67), Expect = 0.60
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 128 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148
Query: 308 NVKTD 322
V D
Sbjct: 149 QVYRD 153
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 31.1 bits (67), Expect = 0.60
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 128 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148
Query: 308 NVKTD 322
V D
Sbjct: 149 QVYRD 153
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 31.1 bits (67), Expect = 0.60
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 128 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 307
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148
Query: 308 NVKTD 322
V D
Sbjct: 149 QVYRD 153
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 209 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
D R +F+G L ++ D+E+ F I ++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 377 SIDKVMAAG 403
+ + V+ G
Sbjct: 340 AANLVLKKG 348
Score = 31.5 bits (68), Expect = 0.46
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +2
Query: 203 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIXSINVKTDP--NTGRSRGFAFIVF 364
G DD+ KL FVG L + K + F +GE+ S+ +++ P ++ R+R A ++
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 365 KAPESIDKVMA 397
+ E V A
Sbjct: 222 QINEKASSVHA 232
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 194 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKA 370
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 371 PESIDKVM 394
+ + +
Sbjct: 241 KKQAEAAL 248
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 35.9 bits (79), Expect = 0.021
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+++G + +SD + + + G ++ + +P DK ++ KGF F +E+
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYET 57
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
+++G + +D+ L D G + +++ D T + +GFAF ++ E D
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.1 bits (77), Expect = 0.037
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 149 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 319
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 320 DPNTGRSRGFAFIVF 364
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+++G L + DD + N FS FG I+ ++ D+ KG+ F+ +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.1 bits (77), Expect = 0.037
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 149 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 319
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 320 DPNTGRSRGFAFIVF 364
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+++G L + DD + N FS FG I+ ++ D+ KG+ F+ +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 35.1 bits (77), Expect = 0.037
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 128 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXS 304
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 31 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 85
Query: 305 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 412
+ ++ R FAFI ++A E + + A ++
Sbjct: 86 VRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 35.1 bits (77), Expect = 0.037
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 128 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXS 304
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 72 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 126
Query: 305 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 412
+ ++ R FAFI ++A E + + A ++
Sbjct: 127 VRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.1 bits (77), Expect = 0.037
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.1 bits (77), Expect = 0.037
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 224 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 388
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.7 bits (76), Expect = 0.049
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 236 GLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 400
GLS TTD+ LR F + + D T R +GF FI F++ + K + A
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKA 126
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 476 GLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
GLS+ +D +R F+ F ++ D+ + KGF FITFES
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFES 116
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 34.7 bits (76), Expect = 0.049
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+++ L +++S++ + FS+FG ++ + D + + +GF FI FES
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFES 66
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +2
Query: 170 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 349
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 350 AFIVFKAPESIDKVM 394
AFI F++ +S + M
Sbjct: 60 AFIEFESADSAGRAM 74
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 34.3 bits (75), Expect = 0.065
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 227 FVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 406
F L + L +F ++GEI + V TG S G+A+I K E +K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 407 HTI 415
H +
Sbjct: 299 HDV 301
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 242 SWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 32.7 bits (71), Expect = 0.20
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 290 GEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 397
G + ++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 452 RHGKIFVGGLSSEISDDEIRNFFSEFG---TILXVEMPFDKTKNQXKGFCFITFE 607
+ GKIFVG L + I E FF +FG ++ ++ + KN GF E
Sbjct: 163 QEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAE 217
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXS-INVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
K+FVG L E + F +G I + I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 405 NTPSTTRKXTQRRLKHDMGRFLSEDSAVKSQM---MKSETSSVNLELSXKWRCPLTKQR 572
NT + + + LK G +E+ K ++ M ++ SSV E++ KWRCP +R
Sbjct: 547 NTEVLVKCSSSKELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKR 605
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 32.3 bits (70), Expect = 0.26
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 206 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDP 54
Query: 374 ESID 385
D
Sbjct: 55 RDAD 58
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFD 562
+++VG LSS ++ FS +G + V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 32.3 bits (70), Expect = 0.26
Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Frame = +2
Query: 194 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
E P D + V LS T ++ F ++ S+ + + + G+ G+ F+ F +
Sbjct: 150 ETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVN-HEGKHVGYGFVEFASA 208
Query: 374 ESIDKVMAA--GEHTINNXXXXXXXXXXRHG---------KIFVGGLSSEISDDEIRNFF 520
+K + GE+ ++N G +FV L I +I NFF
Sbjct: 209 YGANKALEEKNGEY-LHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFF 267
Query: 521 SEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+ G ++ V + ++ + G+ F+ F S
Sbjct: 268 KDVGEVVHVRL-IVNSQGKHAGWGFVEFAS 296
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.9 bits (69), Expect = 0.34
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 155 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXSINVKTDPNT 331
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 332 GRSRGFAFIVFKAPESIDKVMAA 400
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.9 bits (69), Expect = 0.34
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 155 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXSINVKTDPNT 331
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 332 GRSRGFAFIVFKAPESIDKVMAA 400
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 31.9 bits (69), Expect = 0.34
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Frame = +2
Query: 188 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
Query: 365 KAPESIDKVMAAGEHTI----------NNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRN 514
+ M A ++T+ + G + + + + +S+DE+
Sbjct: 229 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 288
Query: 515 FFSEFGTI 538
F +G I
Sbjct: 289 LFGAYGEI 296
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 31.9 bits (69), Expect = 0.34
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Frame = +2
Query: 188 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 364
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
Query: 365 KAPESIDKVMAAGEHTI----------NNXXXXXXXXXXRHGKIFVGGLSSEISDDEIRN 514
+ M A ++T+ + G + + + + +S+DE+
Sbjct: 242 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 301
Query: 515 FFSEFGTI 538
F +G I
Sbjct: 302 LFGAYGEI 309
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 31.5 bits (68), Expect = 0.46
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
++ VGGL + D++ FS GT+ VE F +TK + F +I F
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYIDF 54
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.5 bits (68), Expect = 0.46
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 206 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 373
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDP 54
Query: 374 ESID 385
D
Sbjct: 55 RDAD 58
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFD 562
+++VG LSS ++ FS +G + V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 397
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 221 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 397
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXK 583
+FV G S +S+ ++ FSEFG + E F +KN K
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTN-EHYFSGSKNHRK 98
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 31.1 bits (67), Expect = 0.60
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 485 SEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
S +D+++ N+F FG + V +P+ Q + F F+TF
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPY----QQKRMFGFVTF 363
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 254 TDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
TD+++ ++FG +G + + + + R F F+ F E++ ++A G
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARG 376
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+ V L + +++R F +FG + + +P D +GF F+ F
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITFES 610
+FV L+ D+++ FS FGT++ ++ D + FI FE+
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFEN 293
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 257 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
++++ D+F +G + + + + R F F+ F PE++ ++A G
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKG 213
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
R +FVG +ET +L F YG + +++K+ G+AF+ F+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 164 GGDSQDHNSAEAPGRDDDRK-LFVGGLS-WETTDKELRDHFGAYGEIXSINVKTDPNTGR 337
G + A+AP K LFV T + ++ HF YG++ ++ ++
Sbjct: 74 GERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------- 126
Query: 338 SRGFAFIVFKAPESIDKVMAAGEHT 412
R F+F+ F+ E K + A + +
Sbjct: 127 -RNFSFVQFETQEDATKALEATQRS 150
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
+ V L + +++R F +FG + + +P D +GF FI F
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 467 FVGGLSSEISDDEIRNFFSEFGTILXVEMPF 559
+VG L S+ +++++N FS+FG ++ + F
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 143 NGNAENGG--GDSQDHNSAEAPGRDDDR 220
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 101 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 220
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 98 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 190
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 215 DRKLFVGGLSWETTDKELR----DHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 367
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK 170
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 191 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 316
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 191 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 316
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 485 SEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 604
S D+++ +FS FGT+ V +P+ Q + F F++F
Sbjct: 269 STFKDEDVATYFSLFGTVQDVRIPY----QQKRMFGFVSF 304
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 257 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
D+++ +F +G + + + + R F F+ F PE++ V+A G
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARG 317
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 143 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 274
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 182 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 343
+N A G D + LFV L++E+++ +++ F +YG I + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 266 LRDHFGAYGEIXSINVKTDPNTGRSRGF 349
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 206 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 385
RD+ R LFV GL + +E+ + F + + ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 386 KVMAA 400
VM A
Sbjct: 88 AVMHA 92
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 149 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDP 325
N NG G + +H E P R LFV ++ D EL F YG+I +T
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDI-----RTLY 198
Query: 326 NTGRSRGFAFIVF 364
T + RGF I +
Sbjct: 199 TTCKHRGFVMISY 211
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 149 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDP 325
N NG G + +H E P R LFV ++ D EL F YG+I +T
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDI-----RTLY 198
Query: 326 NTGRSRGFAFIVF 364
T + RGF I +
Sbjct: 199 TTCKHRGFVMISY 211
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 95 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 226
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 257 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
++++RDHF YGEI SI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 266 LRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 394
L HF + GEI + V TD G + AF+ + + DK +
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKAL 175
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 218 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 376
R L+VG L ++EL D F +GE+ S+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/49 (20%), Positives = 26/49 (53%)
Frame = +2
Query: 257 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 403
++++ ++F +G + + + + R F F+ F PE++ ++A G
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKG 316
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 461 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGF 589
KIF+GG S IS + + S FG + + NQ F
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 263 ELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 370
++R G +GEI + + D SRG A++ FKA
Sbjct: 3 KIRVFRGDFGEIIHVQLAIDRAANLSRGDAYVEFKA 38
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 464 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPF---DKTKNQXKGFCFITF 604
++VG LS ++ ++ + F FG I V++ + D+ K + + F++F
Sbjct: 181 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = -1
Query: 237 PPTKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 118
PP S LS S P +L S PPP S+ PLS LS +S
Sbjct: 49 PP--SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLS 86
>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 428
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 140 LNGNAENGGGDSQDHN-SAEAPGRDD 214
+NGN+ NG D +DHN E G D
Sbjct: 113 INGNSNNGFWDQRDHNKKPERNGESD 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,766,507
Number of Sequences: 28952
Number of extensions: 254162
Number of successful extensions: 1281
Number of sequences better than 10.0: 229
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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