Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I12
         (302 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3; ...    51   6e-06
UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3; ...    50   1e-05
UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3, p...    42   0.002
UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3; ...    40   0.014
UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:...    39   0.025
UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole geno...    38   0.058
UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;...    36   0.24 
UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY0350...    36   0.24 
UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM doma...    33   1.7  
UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=1...    33   1.7  
UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis ...    32   2.9  
UniRef50_A2EU18 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein ...    31   6.7  
UniRef50_A0YN85 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  

>UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3;
           n=40; Fungi/Metazoa group|Rep: Small nuclear
           ribonucleoprotein Sm D3 - Homo sapiens (Human)
          Length = 126

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 26/41 (63%), Positives = 29/41 (70%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQMT 276
           VPIKVLHEAEGH           + +GKLIEAEDNMNCQM+
Sbjct: 5   VPIKVLHEAEGHIVTCETNTGEVY-RGKLIEAEDNMNCQMS 44


>UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3;
           n=3; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
           D3 - Caenorhabditis elegans
          Length = 136

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 24/40 (60%), Positives = 29/40 (72%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQM 273
           VPIK+LHEAEGH   L + +     +GKL EAEDNMNCQ+
Sbjct: 6   VPIKILHEAEGHMVTL-ETVTGEVYRGKLSEAEDNMNCQL 44


>UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3,
           putative; n=12; Eukaryota|Rep: Small nuclear
           ribonucleoprotein SmD3, putative - Aspergillus clavatus
          Length = 136

 Score = 42.3 bits (95), Expect = 0.002
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +1

Query: 139 TCLSAVPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQM 273
           T    +PIK+L+EA+GH   L     V + +GKL+EAEDNMN Q+
Sbjct: 5   TSTIGIPIKLLNEAQGHVVTLEITSGVVY-RGKLLEAEDNMNVQL 48


>UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3;
           n=11; Saccharomycetales|Rep: Small nuclear
           ribonucleoprotein Sm D3 - Saccharomyces cerevisiae
           (Baker's yeast)
          Length = 101

 Score = 39.5 bits (88), Expect = 0.014
 Identities = 17/43 (39%), Positives = 30/43 (69%)
 Frame = +1

Query: 145 LSAVPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQM 273
           ++ +P+K+L+EA+GH   L       + +GKL+E+ED+MN Q+
Sbjct: 3   MNGIPVKLLNEAQGHIVSLELTTGATY-RGKLVESEDSMNVQL 44


>UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:
           F5M15.9 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 207

 Score = 38.7 bits (86), Expect = 0.025
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQM 273
           +P+K+LHEA GH   +  +    + +G +IE EDN NCQ+
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELY-RGSMIECEDNWNCQL 45


>UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole genome
           shotgun sequence; n=6; Eukaryota|Rep: Chromosome chr6
           scaffold_28, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 199

 Score = 37.5 bits (83), Expect = 0.058
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQM 273
           +P+K+LHEA GH   +++       +G +IE +DN NCQ+
Sbjct: 7   IPVKLLHEAAGH-VVIVELKSGELYRGSMIECKDNWNCQL 45


>UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
           ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
          Length = 111

 Score = 35.5 bits (78), Expect = 0.24
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +1

Query: 157 PIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQM 273
           P+K+ HE++G    +  +    + +G+++E EDNMNCQ+
Sbjct: 6   PLKIFHESKGTIVTIEVKTGETY-RGRMVETEDNMNCQL 43


>UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY03502;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY03502 - Plasmodium yoelii yoelii
          Length = 215

 Score = 35.5 bits (78), Expect = 0.24
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +1

Query: 157 PIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQMTLV 282
           PIK++HE  GH   +  +  + + +G L+ AEDNMNC ++ V
Sbjct: 6   PIKLIHEGIGHTISVETKSGILY-RGILLFAEDNMNCLLSNV 46


>UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM domain;
           n=5; Apicomplexa|Rep: Small nucealr riboprotein SMD3, SM
           domain - Cryptosporidium parvum Iowa II
          Length = 143

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQMTLVNS 288
           +P+K+L+E  GH   +  +    + +G L   EDNMNC +  VN+
Sbjct: 27  IPLKLLYEGLGHIVTIELKSGDLY-RGTLTHVEDNMNCMLEHVNA 70


>UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=12;
           Eukaryota|Rep: Pre-mRNA splicing factor, putative -
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 124

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMN 264
           VP+K+LHE+ GH   +  +    + +GKL+EAED +N
Sbjct: 6   VPVKLLHESLGHIITVELKTGEMY-RGKLMEAEDTLN 41


>UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis
           G3|Rep: Sm protein - Trichomonas vaginalis G3
          Length = 112

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 148 SAVPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQMTLV 282
           + +PIK+LHEA     ++       + +G L   EDNMNC +T V
Sbjct: 3   NGIPIKLLHEATNFVVEIHLNTGDSY-RGTLKYVEDNMNCWLTNV 46


>UniRef50_A2EU18 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1106

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 145 LSAVPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDN 258
           LS VPI +L     H     KQ P+ FIQ KL++ +DN
Sbjct: 272 LSPVPIAILSHILKHYNTTFKQSPLDFIQ-KLVKEKDN 308


>UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein
           (snrnp),putative; n=1; Eimeria tenella|Rep: small
           nuclear ribonucleoprotein (snrnp),putative - Eimeria
           tenella
          Length = 125

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMN 264
           +P+K+LHE  GH   +  +    + +G L  AEDNMN
Sbjct: 9   IPVKLLHEGLGHTITVETKTGSLY-RGTLENAEDNMN 44


>UniRef50_A0YN85 Cluster: Putative uncharacterized protein; n=1;
           Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
           protein - Lyngbya sp. PCC 8106
          Length = 242

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 106 LYRTFFLTKT*TCLSAVPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQMTLVN 285
           +YR   L++   C S + I +    +G    LLK  PV   Q  L+ A+ N + Q  L+ 
Sbjct: 61  VYRGLHLSQVDLCASGIEINIGQVLKGKPLKLLKSFPVD-CQVCLLSADLNTSLQAPLLT 119

Query: 286 SHIXK 300
           + I K
Sbjct: 120 NAITK 124


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,157,017
Number of Sequences: 1657284
Number of extensions: 4066421
Number of successful extensions: 7200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7190
length of database: 575,637,011
effective HSP length: 77
effective length of database: 448,026,143
effective search space used: 10304601289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)