Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I12
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    43   1e-05
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   1.1  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    24   4.3  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    24   5.6  

>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 42.7 bits (96), Expect = 1e-05
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +1

Query: 160 IKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQM 273
           IK+LHE +GH   +  +    + +GKLIEAEDNMNCQM
Sbjct: 5   IKLLHETQGHIVTMELENGSTY-RGKLIEAEDNMNCQM 41


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 23   DLNASNFFEIFFPIFIVN 76
            D+N+ ++FE FF +F+VN
Sbjct: 994  DVNSLSYFEKFFVLFVVN 1011


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 103 VLYRTFFLTKT*T--CLSAVPIKVLHEAEGHGXDLLKQIPV 219
           V Y   FL +  T  CLSA+P++ L+  + +  D    + V
Sbjct: 242 VTYDLMFLDEPNTPGCLSAIPLRFLYADDVYNSDSFANVSV 282


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 8   IQMSMDLNASNFFEIFFPIFIVNNLRNNTELLSFI 112
           I + M  N  + F +FFPIF+   L  +   + F+
Sbjct: 360 ILVYMVSNWKHRFPVFFPIFLCYTLNASFSTIQFV 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,139,921
Number of Sequences: 5004
Number of extensions: 19304
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)