Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I12
         (302 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               53   4e-08
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     26   5.1  
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  
SB_27169| Best HMM Match : BCCT (HMM E-Value=0)                        25   8.9  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 26/41 (63%), Positives = 31/41 (75%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQMT 276
           VPIK+LHEAEGH   L + +     +GKLIEAEDNMNCQM+
Sbjct: 5   VPIKILHEAEGHVITL-ETLNGEVYRGKLIEAEDNMNCQMS 44


>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 127  TKT*TCLSAVPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAED 255
            T T  C++ +  K +HE E    DLL+++ V  I  KLI+ E+
Sbjct: 1225 TSTNECMTDLRWKDIHELESAYQDLLEEMQV--ISVKLIKTEN 1265


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = -2

Query: 292 CDC*RESFGNSY--YPQLQLISLV*XSPVFVSASXYHDLPPREV 167
           CDC R      +  YP L  +     +P+F      H LP R V
Sbjct: 790 CDCNRVLILRDHPLYPPLTSLMFRDHAPIFAHTQLQHHLPTRRV 833


>SB_27169| Best HMM Match : BCCT (HMM E-Value=0)
          Length = 583

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 151 AVPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNM 261
           AVPI    + +    D L++ PV  I  K I  ED++
Sbjct: 25  AVPITTTGDGQARSQDWLRRCPVIAIIRKCIVFEDSL 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,895,891
Number of Sequences: 59808
Number of extensions: 125739
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)