Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I12
         (302 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p pro...    55   2e-08
AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclea...    55   2e-08
AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA...    55   2e-08
AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-P...    27   3.4  
AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-P...    27   3.4  
AE014134-2068|AAF53099.1|  570|Drosophila melanogaster CG6488-PA...    27   4.6  
AE013599-2467|AAF57864.4|  480|Drosophila melanogaster CG6536-PA...    27   4.6  
AE013599-2466|AAO41361.1|  517|Drosophila melanogaster CG6536-PB...    27   4.6  

>AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p
           protein.
          Length = 151

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 28/43 (65%), Positives = 31/43 (72%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQMTLV 282
           VPIKVLHEAEGH     + I     +GKLIEAEDNMNCQMT +
Sbjct: 5   VPIKVLHEAEGH-IITCETITGEVYRGKLIEAEDNMNCQMTQI 46


>AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclear
           ribonucleoproteinSm D3 protein.
          Length = 151

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 28/43 (65%), Positives = 31/43 (72%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQMTLV 282
           VPIKVLHEAEGH     + I     +GKLIEAEDNMNCQMT +
Sbjct: 5   VPIKVLHEAEGH-IITCETITGEVYRGKLIEAEDNMNCQMTQI 46


>AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA
           protein.
          Length = 151

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 28/43 (65%), Positives = 31/43 (72%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQMTLV 282
           VPIKVLHEAEGH     + I     +GKLIEAEDNMNCQMT +
Sbjct: 5   VPIKVLHEAEGH-IITCETITGEVYRGKLIEAEDNMNCQMTQI 46


>AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-PA,
            isoform A protein.
          Length = 4345

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +2

Query: 8    IQMSMDLNASNFFEIFFPIFIVNNLRNNTELLSFIVRFS*LK 133
            ++  +DLN + F+E     FIVN+ ++NT+ L F+  ++ L+
Sbjct: 2126 VEYHVDLNFNAFYERVK--FIVNDDKDNTQELGFVFNYTALQ 2165


>AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-PB,
            isoform B protein.
          Length = 4374

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +2

Query: 8    IQMSMDLNASNFFEIFFPIFIVNNLRNNTELLSFIVRFS*LK 133
            ++  +DLN + F+E     FIVN+ ++NT+ L F+  ++ L+
Sbjct: 2155 VEYHVDLNFNAFYERVK--FIVNDDKDNTQELGFVFNYTALQ 2194


>AE014134-2068|AAF53099.1|  570|Drosophila melanogaster CG6488-PA
           protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 20  MDLNASNFFEIFFPIFIVNNLRNNTELLSFIVR 118
           MDL      ++ FP  + +NLR N EL +++ +
Sbjct: 7   MDLENERVLKLIFPDGVPDNLRGNPELDNYLAK 39


>AE013599-2467|AAF57864.4|  480|Drosophila melanogaster CG6536-PA,
           isoform A protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 11  QMSMDLNASNFFEIFFPIFIVNNLRNNTELLSFIV 115
           Q +  +N    F IF  +FI+  L  + E+LSF++
Sbjct: 405 QTNQQINDQQMFAIFLRLFILMGLSWSFEILSFLL 439


>AE013599-2466|AAO41361.1|  517|Drosophila melanogaster CG6536-PB,
           isoform B protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 11  QMSMDLNASNFFEIFFPIFIVNNLRNNTELLSFIV 115
           Q +  +N    F IF  +FI+  L  + E+LSF++
Sbjct: 405 QTNQQINDQQMFAIFLRLFILMGLSWSFEILSFLL 439


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,434
Number of Sequences: 53049
Number of extensions: 175492
Number of successful extensions: 291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 570126357
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)