Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I12
         (302 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putati...    39   7e-04
At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3, put...    38   0.001
At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    26   4.2  
At2g36840.1 68415.m04518 ACT domain-containing protein contains ...    26   5.6  
At1g64180.1 68414.m07270 intracellular protein transport protein...    25   7.4  
At1g66910.1 68414.m07604 protein kinase, putative similar to rec...    25   9.7  

>At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           small nuclear ribonucleoprotein Sm D3 (snRNP core
           protein D3, Sm-D3) [Mus musculus] SWISS-PROT:P43331
          Length = 131

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQM 273
           +P+K+LHEA GH   +  +    + +G +IE EDN NCQ+
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELY-RGSMIECEDNWNCQL 45


>At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3,
           putative / snRNP core protein D3, putative / Sm protein
           D3, putative similar to SWISS-PROT:P43331 small nuclear
           ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3)
           [Mouse]
          Length = 128

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +1

Query: 154 VPIKVLHEAEGHGXDLLKQIPVXFIQGKLIEAEDNMNCQM 273
           +P+K+LHE+ GH   +  +    + +G +IE EDN NCQ+
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELY-RGSMIECEDNWNCQL 45


>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 77  NLRNNTELLSFIVRFS*LKRKHVYRLCLLK 166
           NL+ +TELL  + R   L+ +HV  + L+K
Sbjct: 112 NLKTSTELLKVLNRIWSLEEQHVSNISLIK 141


>At2g36840.1 68415.m04518 ACT domain-containing protein contains
           Pfam profile ACT domain PF01842
          Length = 410

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 117 RTIKDNNSVLFLRLFTIKMGKN 52
           RT KD N  +    FTIK+GKN
Sbjct: 262 RTFKDFNIQISYGRFTIKLGKN 283


>At1g64180.1 68414.m07270 intracellular protein transport protein
           USO1-related similar to Rap8 (GI:2326183) [Rhynchosciara
           americana]; contains weak similarity to
           Swiss-Prot:P25386 intracellular protein transport
           protein USO1 [Saccharomyces cerevisiae]
          Length = 593

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 74  NNLRNNTELLSFIVRFS*LKRKHVYRLCLLK 166
           NN++ +TELL  + R   L+ +H   + L+K
Sbjct: 183 NNIKTSTELLKVLNRIWILEEQHSANISLIK 213


>At1g66910.1 68414.m07604 protein kinase, putative similar to
           receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 666

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 151 AVPIKVLHEAEGHGXDLLKQI 213
           +V +KVL E++G+G D + ++
Sbjct: 372 SVAVKVLKESQGNGEDFINEV 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,578,147
Number of Sequences: 28952
Number of extensions: 88249
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)