Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I10
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764... 74 9e-14
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 33 0.15
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289... 29 2.4
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 29 2.4
06_03_0521 + 21724447-21724594,21724795-21725342 29 3.2
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249... 29 3.2
02_01_0679 - 5048653-5051394 29 3.2
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 29 4.3
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 7.5
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 27 9.9
>05_05_0208 +
23275931-23275996,23276084-23276196,23276279-23276459,
23276590-23276674,23276974-23277104,23277194-23277432,
23277512-23277748,23277838-23277992,23278039-23278271,
23278359-23278521,23278613-23278818,23278960-23279019,
23279106-23279198,23279406-23279569,23280070-23280138,
23280241-23280382,23280490-23280546
Length = 797
Score = 74.1 bits (174), Expect = 9e-14
Identities = 35/103 (33%), Positives = 59/103 (57%)
Frame = +1
Query: 343 QREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSPERAKNLLXNAFEEQIA 522
+R +L+FLD + +YM+ V+ M+++K RL++ ++DLR S + A+ ++ + E
Sbjct: 12 KRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARRVIRSPAEYMQP 71
Query: 523 FQKALKEYVSSIDPTYAKIQEEFFVAFSGSFGNKHVTPRSLTS 651
A+ E ++DP + K + V FSG FG VTPR L S
Sbjct: 72 ASDAVTEVARNLDPKFLKEGQRVLVGFSGPFGFHRVTPRDLMS 114
>03_05_0176 + 21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/108 (23%), Positives = 53/108 (49%)
Frame = +1
Query: 295 KFNMEEGDFDQRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSP 474
+ + E+ + Q+ R+ Q++ + ++QE M+K++++ + K+KR RRK
Sbjct: 763 QMSQEKHHWQQKHREEQQQQFQNQSKEQEQERRMQKLRELRKKKNKR------TQRRKRK 816
Query: 475 ERAKNLLXNAFEEQIAFQKALKEYVSSIDPTYAKIQEEFFVAFSGSFG 618
+ A+ + + FE+Q A + +S ++I FSG+ G
Sbjct: 817 QNAQVMKQHQFEKQRKLYHA-GSFTNSQSYVRSEIHHHLSQHFSGTIG 863
>03_01_0372 +
2895807-2895883,2896557-2896647,2896741-2896839,
2897220-2897268,2897269-2897405,2898027-2898248,
2898335-2898488,2898574-2898723,2898890-2898978,
2899632-2899844,2900180-2900314,2900461-2900640,
2901004-2901111,2901215-2901340,2901421-2901550,
2901637-2901729,2902067-2902192,2902294-2902304
Length = 729
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +1
Query: 307 EEGDFDQRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSPERAK 486
EE D++ + ++ E + E Q+ K +E K K S+NDL+ S + +
Sbjct: 368 EEVDYESLYKKVEHEVDHLTSEMERQQKLKNSEKMQLEKKLKESEASLNDLKVTSNMQIE 427
Query: 487 NL 492
N+
Sbjct: 428 NM 429
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 331 LRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSPERAKNLLXNAFE 510
L +L R + + ++Y+EK+ ++ D S L++ ++ S R L+ +
Sbjct: 1083 LEELDRSHGNLQSHSTEHDVYLEKLSTLVMDNSLLSLMTEEFGKKVSTLREMALIVRSMR 1142
Query: 511 EQIA 522
EQ+A
Sbjct: 1143 EQLA 1146
>06_03_0521 + 21724447-21724594,21724795-21725342
Length = 231
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 559 LSKTHILLKPFGMLSVLQRHXVVNSWHVQD 470
L+KT +L F + S L RH V WH +D
Sbjct: 84 LAKTRLLTLRFPLFSFLCRHCDVRQWHNRD 113
>05_01_0318 -
2488529-2489196,2489773-2490372,2490620-2490773,
2490996-2491085,2491926-2492061,2492159-2492418,
2493448-2493846,2494482-2494661,2494728-2494922,
2496614-2496678,2497186-2497321,2497442-2497483,
2498351-2498689
Length = 1087
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 325 QRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDL 459
QR+ +++ L+ L G DQE Y+ V++ ++ K LL N+L
Sbjct: 327 QRINRMEKSRLQVLKAG-DQEAYLRMVEESKNERLKLLLGKTNEL 370
>02_01_0679 - 5048653-5051394
Length = 913
Score = 29.1 bits (62), Expect = 3.2
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Frame = +1
Query: 253 VLKQLKQNITIFKAKF-----NMEEGDFDQRLRDL--QREYLEFLDDGEDQEIYMEKVKQ 411
+L+QL Q ++ ++K M G + L+++ ++YL LDD D + E
Sbjct: 239 ILRQLIQELSEDQSKIPTDLDTMHHGKLNDELKEVLSNKKYLIVLDDVWDTRAFHELSDS 298
Query: 412 MIED-KSKRLLVSI--NDLRRKSPERAK---NLLXN--AFE--EQIAFQKALKEYVSSID 561
+++D K R++++ ND+ + E K N L N AFE + FQK+ E S ++
Sbjct: 299 LMDDKKGSRIIITTRNNDVASLAQEMYKMKLNPLGNDDAFELFHRRCFQKSNMECPSHLE 358
>11_06_0295 +
22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 28.7 bits (61), Expect = 4.3
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Frame = +1
Query: 277 ITIFKAKFNMEEGDFDQRLRDLQREY-LEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSIN 453
I F+AK GD+D RD +R Y ++ DD D I + E+K RL+ ++
Sbjct: 275 IASFRAKLLYILGDYDAAERDCRRGYTMKNPDDPADDCIPPGSIGG--ENKGDRLITHVS 332
Query: 454 DLRR--KSPERAKNLLXNAFEEQIAFQKALKEYVSSIDPTYAKI-QEEFFVAFSGSFGNK 624
+ R NL N+ ++ + L + Y K+ + F ++ FG K
Sbjct: 333 EFHELINKIVRTANLYWNSMTQE-QRGEFLSVRFDELQEDYNKVDRSSFTMSDVLRFGEK 391
Query: 625 H 627
H
Sbjct: 392 H 392
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/130 (18%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +1
Query: 259 KQLKQNITIFKAKFNMEEGDFDQRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRL 438
K+L+ + F+ K D ++RL ++Q+E E + +++ + ++++MIE RL
Sbjct: 1226 KELEDELVTFRTKAE----DLEKRLLEVQKESDELSREILEKDSKLNQLQEMIE----RL 1277
Query: 439 LVSINDLRRKSPE-RAKNLLXNAFEEQIAFQKALKEYVSSIDPTYAKIQEEFFVAFSGSF 615
+++ L ++ R ++LL +A +++ ++L+ ++ ++ ++ + VA
Sbjct: 1278 ETNLSSLESENQVLRQQSLLASADDDKSKQIESLESKIAILESENQLLRSKSSVAVQAVI 1337
Query: 616 GNKHVTPRSL 645
+ + P ++
Sbjct: 1338 TPEVIQPSAM 1347
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 259 KQLKQNITIFKAKFNMEEGDFDQRLRDLQREYLEFLDDGEDQEIYMEKVK---QMIEDKS 429
K Q I F+ K + DQ R L+ + + + +I ME+++ Q +EDK
Sbjct: 226 KDQAQEIKTFRLKLENLQTLKDQAYR-LRDNIAQDQEKSDALKIQMEELRTNVQGVEDKI 284
Query: 430 KRLLVSINDLRRKSPE 477
+R S+ DLRR E
Sbjct: 285 RRTEKSLADLRRLQQE 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,827,787
Number of Sequences: 37544
Number of extensions: 215895
Number of successful extensions: 535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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