Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I10
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46280.1 68418.m05697 DNA replication licensing factor, putat... 69 3e-12
At5g05220.1 68418.m00556 expressed protein 33 0.13
At3g29660.1 68416.m03739 hypothetical protein 32 0.38
At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain... 30 1.2
At5g23040.2 68418.m02694 expressed protein similar to unknown pr... 30 1.5
At5g23040.1 68418.m02693 expressed protein similar to unknown pr... 30 1.5
At1g47420.1 68414.m05252 expressed protein identical to hypothet... 30 1.5
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 29 2.0
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 29 2.0
At2g41850.1 68415.m05172 endo-polygalacturonase, putative simila... 29 2.0
At1g04280.1 68414.m00419 expressed protein 29 2.0
At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 29 2.7
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 29 2.7
At5g25070.1 68418.m02971 expressed protein 29 2.7
At3g32900.1 68416.m04166 Ulp1 protease family protein similar to... 29 2.7
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 29 2.7
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 29 2.7
At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replicati... 29 3.6
At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)... 28 6.2
At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)... 28 6.2
At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)... 28 6.2
At5g07890.1 68418.m00910 myosin heavy chain-related contains wea... 28 6.2
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ... 28 6.2
At5g37730.1 68418.m04542 expressed protein 27 8.2
At3g46160.1 68416.m04995 protein kinase-related contains eukaryo... 27 8.2
At2g26820.1 68415.m03218 avirulence-responsive family protein / ... 27 8.2
At1g53800.1 68414.m06123 expressed protein 27 8.2
At1g32840.1 68414.m04047 Ulp1 protease family protein similar to... 27 8.2
>At5g46280.1 68418.m05697 DNA replication licensing factor, putative
similar to SP|Q43704 DNA replication licensing factor
MCM3 homolog (Replication origin activator) (ROA
protein) {Zea mays}; contains Pfam profile PF00493:
MCM2/3/5 family
Length = 776
Score = 68.9 bits (161), Expect = 3e-12
Identities = 40/110 (36%), Positives = 61/110 (55%)
Frame = +1
Query: 322 DQRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSPERAKNLLXN 501
+ RLR +R++++FLD +YME++K ++ K RL+++I+D+ E A +L N
Sbjct: 6 ETRLRH-KRDFIQFLDS-----MYMEEIKALVHQKRHRLIINISDIHHHFREVASRILKN 59
Query: 502 AFEEQIAFQKALKEYVSSIDPTYAKIQEEFFVAFSGSFGNKHVTPRSLTS 651
E +F A E +IDP Y K E V F G F ++ VTPR L S
Sbjct: 60 PNEYMQSFCDAATEATRAIDPKYLKEGELVLVGFEGYFVSRVVTPRELLS 109
>At5g05220.1 68418.m00556 expressed protein
Length = 182
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +1
Query: 340 LQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSPE 477
L++E + DDG+D + Y + K I DKS ++ +I + R +SPE
Sbjct: 139 LEKEAIMGADDGKDPKDYNRRAK--IFDKSSKIFKNIKEQREQSPE 182
>At3g29660.1 68416.m03739 hypothetical protein
Length = 138
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/67 (29%), Positives = 39/67 (58%)
Frame = +1
Query: 295 KFNMEEGDFDQRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSP 474
KFN + G+ +Q++R+L+ + LEF +++ EKV+ IE++ L ++D +S
Sbjct: 63 KFNAKIGEVEQQVRELRTQSLEF------EKMVCEKVQMKIENE---LFEKVDDALAESK 113
Query: 475 ERAKNLL 495
E K ++
Sbjct: 114 EGNKKMM 120
>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
protein contains Pfam profile PF00169: PH domain
Length = 1322
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 415 IEDKSKRLLVSINDLRRKSPERAKNLLXNAFEEQIAFQKALKEYVSSIDPTYAKIQEEFF 594
IED S +L S D +SPER L + E + F +A + V SID Y ++ F
Sbjct: 893 IEDLSSEMLPSFEDAESRSPER---LDPTSSEGEEKFYEAPEILVDSID--YTSLRTPSF 947
Query: 595 VAFSG--SFGNKHVTPRS 642
G NK++T S
Sbjct: 948 SRIDGLLPVDNKNITKPS 965
>At5g23040.2 68418.m02694 expressed protein similar to unknown
protein (emb|CAB62636.1)
Length = 258
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +1
Query: 397 EKVKQMIEDKSKRLLVSINDLRRKSPERAKNLLXNAFEEQIAFQKALKEYVSSIDPTYAK 576
E+ ++ IE ++LL+S R+K+ K+ L EE + KAL ++V + P
Sbjct: 99 ERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKKVEESPPWLKALLDFV-EMPPMDTI 157
Query: 577 IQEEFFVAFSGSF 615
+ F AF G +
Sbjct: 158 FRRLFLFAFMGGW 170
>At5g23040.1 68418.m02693 expressed protein similar to unknown
protein (emb|CAB62636.1)
Length = 258
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +1
Query: 397 EKVKQMIEDKSKRLLVSINDLRRKSPERAKNLLXNAFEEQIAFQKALKEYVSSIDPTYAK 576
E+ ++ IE ++LL+S R+K+ K+ L EE + KAL ++V + P
Sbjct: 99 ERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKKVEESPPWLKALLDFV-EMPPMDTI 157
Query: 577 IQEEFFVAFSGSF 615
+ F AF G +
Sbjct: 158 FRRLFLFAFMGGW 170
>At1g47420.1 68414.m05252 expressed protein identical to
hypothetical protein GB:AAD46040 GI:5668814 from
[Arabidopsis thaliana]
Length = 257
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 316 DFDQRLRDLQREYLEFLDDGEDQEIYMEKVKQM 414
D LR + Y E+LD E +E+Y++K +M
Sbjct: 185 DITDALRTAYQRYAEYLDSFEPEEVYLKKKVEM 217
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 376 EDQEIYMEKV-KQMIEDKSKRLLVSINDLRRKSPERAKNLLXNAFEEQIAFQKALKEYVS 552
+D+ I KV K+MIED SK L N PER N F +F + L +Y S
Sbjct: 467 DDEVIIPNKVMKEMIEDSSKLLAKRRNVPHTDCPERRTKRFANPFR---SFLEPLIQYGS 523
Query: 553 S 555
S
Sbjct: 524 S 524
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 376 EDQEIYMEKV-KQMIEDKSKRLLVSINDLRRKSPERAKNLLXNAFEEQIAFQKALKEYVS 552
+D+ I KV K+MIED SK L N PER N F +F + L +Y S
Sbjct: 467 DDEVIIPNKVMKEMIEDSSKLLAKRRNVPHTDCPERRTKRFANPFR---SFLEPLIQYGS 523
Query: 553 S 555
S
Sbjct: 524 S 524
>At2g41850.1 68415.m05172 endo-polygalacturonase, putative similar
to endo-polygalacturonase [Arabidopsis thaliana]
GI:2597824; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 433
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 563 GSIEDTYSFKAFWNAICSSKAXCSKFLARSGLLRLKSLMLT 441
G +DT +F W CSS + + + LKS+ LT
Sbjct: 79 GKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLT 119
>At1g04280.1 68414.m00419 expressed protein
Length = 480
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 249 KLTKIKKSLRIVEFILIEMRVVESNISHDHCYE 151
++TK K R++ ++ EMRV+ S S HC E
Sbjct: 133 RVTKDLKVKRVISTLVEEMRVIGSGSSEPHCTE 165
>At5g61460.1 68418.m07712 structural maintenance of chromosomes
(SMC) family protein very strong similarity to SMC-like
protein (MIM) [Arabidopsis thaliana] GI:5880614;
contains Pfam profile PF02463: RecF/RecN/SMC N terminal
domain
Length = 1057
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/64 (28%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Frame = +1
Query: 331 LRDLQREYLEFLDDGEDQEIYMEKVKQMIED---KSKRLLVSINDLRRKSPERAKNLLXN 501
+ +LQRE ++ L++ +++E ++EK++ +++ K+ +L ++R E AK + +
Sbjct: 715 VNELQREIMKDLEEIDEKEAFLEKLQNCLKEAELKANKLTALFENMR----ESAKGEI-D 769
Query: 502 AFEE 513
AFEE
Sbjct: 770 AFEE 773
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +1
Query: 340 LQREYLEFLDDGEDQEIYMEKVKQMIED-KSKRLLVSINDLRRKSP---ERAKNLLXNAF 507
L + YL+ DG+D ++K ++E+ K V+ N + R +++ NLL +A
Sbjct: 391 LAKNYLDL--DGDDAHPLFSEIKALLEETKISPADVAENLMARNQQIDVDKSLNLLISAL 448
Query: 508 EEQIAFQKALKE 543
EE+ +Q++ +E
Sbjct: 449 EEENQYQRSQQE 460
>At5g25070.1 68418.m02971 expressed protein
Length = 736
Score = 29.1 bits (62), Expect = 2.7
Identities = 26/108 (24%), Positives = 45/108 (41%)
Frame = +1
Query: 256 LKQLKQNITIFKAKFNMEEGDFDQRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKR 435
++ +++ I F + D+ L D+Q E + ED + V + + + +R
Sbjct: 414 IEAVEERINNVVTGFKELQTSMDKMLNDVQAGLTEVDKETEDLSRKKKDVDEFMTSEKER 473
Query: 436 LLVSINDLRRKSPERAKNLLXNAFEEQIAFQKALKEYVSSIDPTYAKI 579
+ DL R S + A +EE I +K L YVS AK+
Sbjct: 474 G-AKLRDLARVSADEACE-----YEEVIKLRKGLMSYVSKTREERAKL 515
>At3g32900.1 68416.m04166 Ulp1 protease family protein similar to
At1g32840, At4g04010, At2g06430, At2g15140, At2g04980,
At2g14130, At3g44500, At2g15190, At3g47260, At5g34900,
At3g29210, At2g02210
Length = 654
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 331 LRDLQREYLEFLDDGEDQEIYMEKV-KQMIEDKSKRLL 441
L + Y+EFLDD E + E++ K +IE+++K +L
Sbjct: 496 LNAIDESYMEFLDDKEGFQFQSEEISKLVIEEETKCIL 533
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/93 (19%), Positives = 42/93 (45%)
Frame = +1
Query: 310 EGDFDQRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSPERAKN 489
E +F+ L++ +G + E K K M+E+ + +I L++ + ++N
Sbjct: 380 EREFEAATIGLEQLKANDFSEGNNNEEQSAKRKSMLEEIEREFEAAIGGLKQIKVDDSRN 439
Query: 490 LLXNAFEEQIAFQKALKEYVSSIDPTYAKIQEE 588
L + + +I ++ +E+ + AK +E
Sbjct: 440 LEEESAKRKIILEEMEREFEEAHSGINAKADKE 472
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/93 (19%), Positives = 42/93 (45%)
Frame = +1
Query: 310 EGDFDQRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSPERAKN 489
E +F+ L++ +G + E K K M+E+ + +I L++ + ++N
Sbjct: 376 EREFEAATIGLEQLKANDFSEGNNNEEQSAKRKSMLEEIEREFEAAIGGLKQIKVDDSRN 435
Query: 490 LLXNAFEEQIAFQKALKEYVSSIDPTYAKIQEE 588
L + + +I ++ +E+ + AK +E
Sbjct: 436 LEEESAKRKIILEEMEREFEEAHSGINAKADKE 468
>At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replication
licensing factor Mcm7 (MCM7) identical to DNA
replication licensing factor Mcm7 SP|P43299 PROLIFERA
protein {Arabidopsis thaliana}; contains Pfam profile
PF00493: MCM2/3/5 family
Length = 716
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 304 MEEGDFDQRLRDLQREYLEFLDDGEDQEIYMEKVKQMIEDKSKRLLVSINDL---RRKSP 474
M++ DFD + L + +LE D + YME ++++ K + + V ++DL + +S
Sbjct: 1 MKDHDFDGD-KGLAKGFLENFADANGRSKYMEILQEVSNRKIRAIQVDLDDLFNYKDESE 59
Query: 475 ERAKNLLXNAFEEQIAFQKALKEYVSSIDPTYA 573
E L N F A+ E + +PT A
Sbjct: 60 EFLGRLTENTRRYVSIFSAAVDELLP--EPTEA 90
>At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 613
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +1
Query: 310 EGDFDQRLRDLQREYLEFLDDGE--DQEIYMEKVKQM 414
EGD +++ +E LE+LD+ + ++E Y EK+K++
Sbjct: 540 EGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEV 576
>At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 668
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +1
Query: 310 EGDFDQRLRDLQREYLEFLDDGE--DQEIYMEKVKQM 414
EGD +++ +E LE+LD+ + ++E Y EK+K++
Sbjct: 595 EGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEV 631
>At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)
SWISS-PROT:Q9LKR3 PMID:8888624
Length = 669
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +1
Query: 310 EGDFDQRLRDLQREYLEFLDDGE--DQEIYMEKVKQM 414
EGD +++ +E LE+LD+ + ++E Y EK+K++
Sbjct: 595 EGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEV 631
>At5g07890.1 68418.m00910 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, cardiac muscle alpha
isoform (MyHC-alpha) (Alpha isomyosin) (Fragment)
(Swiss-Prot:P04460) [Oryctolagus cuniculus]
Length = 409
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 253 VLKQLKQNITIFKAKFNMEEGDFDQRLRDLQREYLEFLDDGEDQEIYMEK 402
V+KQLK+ + K K E D Q + +L+ + LD+ ++ + +E+
Sbjct: 329 VVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERNRRVCIEQ 378
>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
GT-2 factor [Arabidopsis thaliana GI:416490
Length = 496
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 376 EDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSPER 480
E Q+ ++EK+ +++EDK + ++ + RR ER
Sbjct: 291 EKQDFWLEKLMKIVEDKEHQRMLREEEWRRIEAER 325
>At5g37730.1 68418.m04542 expressed protein
Length = 182
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 397 EKVKQMIEDKSKRLLVSINDLRRKSPERAKNLLXNAFEE-QIAFQKALKEY 546
E VK +++ K+K+LLVS+N L P R L N +E A LK Y
Sbjct: 5 ENVKGVMKRKNKKLLVSVNVLGSVGPIR---FLANEDDEVSSAINTTLKAY 52
>At3g46160.1 68416.m04995 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 393
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +1
Query: 340 LQREYLEFLDDGEDQEIYMEK 402
L+ E+L+++D+ E++EIY E+
Sbjct: 327 LEHEFLKWIDEDEEEEIYEEE 347
>At2g26820.1 68415.m03218 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
SP|P54120 AIG1 protein {Arabidopsis thaliana}; contains
Pfam profile PF04548: AIG1 family
Length = 463
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Frame = +1
Query: 256 LKQLKQNITIFKAKFNMEEGDFDQRLRD-------LQREYLEFLDDGEDQEIYMEKVKQM 414
L +++QN+ + K K MEE Q + +++E + + E + +EK+ QM
Sbjct: 235 LAEMQQNLLMEKEKLQMEEAKNKQLIAQAEANEKLMEQERAKNRAETELAAVMVEKL-QM 293
Query: 415 IEDKSKRLLVSIN 453
E+K+K+L+ N
Sbjct: 294 EEEKNKQLIAQAN 306
>At1g53800.1 68414.m06123 expressed protein
Length = 568
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 367 DDGEDQEIYMEKVKQMIEDKSKRLLVSINDLRRKSPERAKNL 492
DDGE+Q EK+++M K+ R N R+ SPE + +
Sbjct: 95 DDGEEQVDDREKLRRMRISKANRGNTPWNKGRKHSPETLQKI 136
>At1g32840.1 68414.m04047 Ulp1 protease family protein similar to
At4g04010, At2g06430, At2g15140, At2g04980, At2g14130,
At3g44500, At2g15190, At3g47260, At5g34900, At3g29210,
At2g02210, At3g32900
Length = 611
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 268 KQNITIFKAKFNMEEGDFDQRLRDLQREYLEFLDDGEDQEIYMEKV-KQMIEDKSKRLL 441
+ N +FK K + G L + Y+EFLD+ E + E++ K +IE+++K +L
Sbjct: 427 ESNPELFKNKLVVFVGS--SFLNVIDESYMEFLDNKEGFQFQSEEISKLIIEEETKCIL 483
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,211,340
Number of Sequences: 28952
Number of extensions: 202086
Number of successful extensions: 630
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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