Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I09
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    56   4e-09
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   7.2  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   7.2  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
 Frame = +2

Query: 254 VFVGCCSSAFLMEILMTKMPECAXXXXXXXXXXXXVQX---FVVTTKLGTIAPKIPLKSY 424
           +F GCCS+A+ +E L+ + P               ++    F++        PK+P K +
Sbjct: 9   IFGGCCSNAYALEALVREFPSSGILITFSQFILITIEGLIYFLLNDVQSLKHPKVPRKRW 68

Query: 425 GILVTLFFISSVANNYVYALHVPSTLHMIIRSASSPASLLVYCLIKKQKPKLNXTVXSI- 601
            ++V +FF  +V NN      +   +H+I+RS S P + +    I   K   +  + S+ 
Sbjct: 69  FVVVVMFFAINVLNNVALGFDISVPVHIILRS-SGPLTTMAVGRILAGKRYSSLQIGSVF 127

Query: 602 LISFGVALAMYGGA 643
           +++ GV +A  G A
Sbjct: 128 ILTIGVIIATLGNA 141


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 401 PKIPLKSYGILVTLFFISSVANNYVY 478
           P IPL  YG    ++ + + ANNY+Y
Sbjct: 489 PGIPLLYYGDEQGMYVLDNSANNYLY 514


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 370  KTLNSYE*KLKKCNKSSALWHFCHENFH*ESTRATTDE 257
            K L  +  KLK  N  +++   C ENF  + TR   DE
Sbjct: 1851 KALQIFREKLKDLNCKNSMNEMCIENFLMKCTRKYFDE 1888


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 274 ECFLNGNSHDKNARVRYFYYISSIFI 351
           + F +G+SHD+N    YF  I  IF+
Sbjct: 489 DIFQSGSSHDENHDDNYFINIFIIFL 514


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 77  LWIQFTQLPIYFTIPKNGNETVIDENTTSYKMRTH 181
           +W   T + + FT+P+  +ET++D      + +T+
Sbjct: 272 IWAGLTWVIVCFTMPETHSETLLDFKARYLRKKTN 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,934
Number of Sequences: 5004
Number of extensions: 51281
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)