Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I09
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036696-3|ABB51190.1|  292|Caenorhabditis elegans Hypothetical ...    57   1e-08
AF036696-2|AAB88349.1|  324|Caenorhabditis elegans Hypothetical ...    57   1e-08
Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical pr...    40   0.002
AC006689-3|AAO21400.1|  310|Caenorhabditis elegans Hypothetical ...    31   0.71 
AC006689-2|AAF39970.2|  341|Caenorhabditis elegans Hypothetical ...    31   0.71 
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   8.8  

>AF036696-3|ABB51190.1|  292|Caenorhabditis elegans Hypothetical
           protein F15B10.1b protein.
          Length = 292

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/85 (35%), Positives = 46/85 (54%)
 Frame = +2

Query: 371 VVTTKLGTIAPKIPLKSYGILVTLFFISSVANNYVYALHVPSTLHMIIRSASSPASLLVY 550
           V T+K  T+  +IPLK Y   VT+FFI +V NN     HVP  LH+I RS S  A+L++ 
Sbjct: 18  VSTSKFFTVKNQIPLKGYFKTVTMFFIVNVVNNQALNFHVPVPLHIIFRSGSLLATLILS 77

Query: 551 CLIKKQKPKLNXTVXSILISFGVAL 625
            ++  +       +    I+ G+ +
Sbjct: 78  VVMVGKSYSARKYISVFAITIGIVI 102


>AF036696-2|AAB88349.1|  324|Caenorhabditis elegans Hypothetical
           protein F15B10.1a protein.
          Length = 324

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/85 (35%), Positives = 46/85 (54%)
 Frame = +2

Query: 371 VVTTKLGTIAPKIPLKSYGILVTLFFISSVANNYVYALHVPSTLHMIIRSASSPASLLVY 550
           V T+K  T+  +IPLK Y   VT+FFI +V NN     HVP  LH+I RS S  A+L++ 
Sbjct: 50  VSTSKFFTVKNQIPLKGYFKTVTMFFIVNVVNNQALNFHVPVPLHIIFRSGSLLATLILS 109

Query: 551 CLIKKQKPKLNXTVXSILISFGVAL 625
            ++  +       +    I+ G+ +
Sbjct: 110 VVMVGKSYSARKYISVFAITIGIVI 134


>Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical
           protein C53B4.6 protein.
          Length = 318

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/121 (19%), Positives = 50/121 (41%)
 Frame = +2

Query: 263 GCCSSAFLMEILMTKMPECAXXXXXXXXXXXXVQXFVVTTKLGTIAPKIPLKSYGILVTL 442
           GC      +E L T +                    +  +K  T+  +IP+KSY  +V +
Sbjct: 12  GCVGCQAGIEYLQTYVKNSLNLITFASFIFTATYGLIFHSKFFTVPNRIPIKSYAKIVAI 71

Query: 443 FFISSVANNYVYALHVPSTLHMIIRSASSPASLLVYCLIKKQKPKLNXTVXSILISFGVA 622
           FF  ++ NN      +   L +I +S +   ++ +  +I+  +  L      ++++ G+ 
Sbjct: 72  FFTVNMTNNLALKFAIYFPLFIIFKSGTLLTNMTMGWIIRNYQYSLKQISAVVVVTAGIV 131

Query: 623 L 625
           +
Sbjct: 132 I 132


>AC006689-3|AAO21400.1|  310|Caenorhabditis elegans Hypothetical
           protein T22E7.1b protein.
          Length = 310

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +1

Query: 169 NAHSLIVIINKIITVNSDQNEFNQKVCTRIRRLLLECFLNGNSHDKNARVRYFYYISSIF 348
           N   L + IN+I   +S  + F  +   +++RL +   L+GN  +K+  +R F++  + F
Sbjct: 98  NMQFLYLSINQIS--HSQPDPF--QALEKLKRLEMNDALDGNMEEKSDMLRNFFHSKNSF 153

Query: 349 IHNCSXFCGNNKI 387
           +H        NKI
Sbjct: 154 VHLAQIELNKNKI 166


>AC006689-2|AAF39970.2|  341|Caenorhabditis elegans Hypothetical
           protein T22E7.1a protein.
          Length = 341

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +1

Query: 169 NAHSLIVIINKIITVNSDQNEFNQKVCTRIRRLLLECFLNGNSHDKNARVRYFYYISSIF 348
           N   L + IN+I   +S  + F  +   +++RL +   L+GN  +K+  +R F++  + F
Sbjct: 98  NMQFLYLSINQIS--HSQPDPF--QALEKLKRLEMNDALDGNMEEKSDMLRNFFHSKNSF 153

Query: 349 IHNCSXFCGNNKI 387
           +H        NKI
Sbjct: 154 VHLAQIELNKNKI 166


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 331 YISSIFIHNCSXFCGNNKIRNNCAKNTFKKL 423
           Y S   I NC  F   N ++ N AKN   KL
Sbjct: 108 YSSPEIISNCDYFHTFNALKENLAKNVLNKL 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,374
Number of Sequences: 27780
Number of extensions: 288636
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)