Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I08
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.7  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 183 ILTSETKVIVQGFHWKAGLPSTANKPLTMVLKLLEE 290
           I  S  ++I     W   +P+    PL+  L LLEE
Sbjct: 199 ICESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEE 234


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 631  YNSDATTFVHCSW 593
            Y  D T ++HC W
Sbjct: 1287 YPGDCTRYLHCLW 1299


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 183 ILTSETKVIVQGFHWKAGLPSTANKPLTMVLKLLEE 290
           I  S  +++     W   +P+    PL+  L LLEE
Sbjct: 199 ICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEE 234


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 42  FPFRRFTFNNSTMAMPVRVLSKFKDGLKLGNV 137
           FP+R    + +    PV ++ K  DG+ +  +
Sbjct: 216 FPYRGVMIDTARNFFPVDLIRKVVDGMAMAKL 247


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 336 NTGLPRCSVPAFFGD 292
           NT + +C++P+F  D
Sbjct: 138 NTAVLKCNIPSFVAD 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,167
Number of Sequences: 336
Number of extensions: 3041
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)