Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I08
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 197 1e-51
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 27 3.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 4.1
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 5.5
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 26 5.5
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 25 7.2
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 9.5
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 25 9.5
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 197 bits (480), Expect = 1e-51
Identities = 90/140 (64%), Positives = 106/140 (75%)
Frame = +2
Query: 233 RATFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXX 412
+ TFH+Q A+DYGTKVVGG +PKKAGT HLGKPVFGT++EA T A AS ++VPPP
Sbjct: 52 QGTFHAQHAMDYGTKVVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAA 111
Query: 413 XXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSXLVGPNCPGIIAPXKCKIGIM 592
+PLIV ITEG+PQHDM+RV L Q+KS LVGPNCPGII P +CKIGIM
Sbjct: 112 GAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIM 171
Query: 593 PAAVHKRGCIGVVSRSGTLT 652
P+ +HK GCIG+VSRSGTLT
Sbjct: 172 PSHIHKPGCIGIVSRSGTLT 191
Score = 31.9 bits (69), Expect = 0.083
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 99 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFHWKAG 236
L +F +L N S + Y +T NL++ S+TKVI QGF K G
Sbjct: 12 LRRFSSSSQLKN----SKSLYEQTIPNLMINSDTKVIFQGFTGKQG 53
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 197 NKSDCSGLSLESRATFHSQQALDYGTKVVGGVSPKKA 307
N S+C G++L++ F +D + GG+SP +A
Sbjct: 313 NNSECFGINLDANWAFGFNGNIDPCSNEYGGLSPFQA 349
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 369 PVPAFASLTVPNTGLPRCSVPAFFGDTPPTTLVP 268
P+P++ + ++PN G+P ++P P T +P
Sbjct: 124 PLPSYNTASLPNAGIP-AAMPGMPSGYPGTVPIP 156
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 45 PFRRFTFNNSTMAMPVRVLSKFKDGLK-LGNVRFASGNPYA 164
PF F N T +PV +S+ +G + N + P+A
Sbjct: 33 PFESSVFENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 102 SKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFHWKAGLPSTANKPL 263
+K K+ LK N F S NP+ L L S + + + + LP T N PL
Sbjct: 60 NKAKEELKKLNPNFESCNPHITLCTFLALESLKGIQSKWYGYIEYLPKTFNTPL 113
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 142 NRTLPSFSPSLNLERTRTGIAIVELLNVNL 53
NR PS+S SLN T ++ VE +N +L
Sbjct: 297 NRAPPSYSFSLNCSHTYQPVSCVEPVNHDL 326
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 66 NNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFHWKAGLPS 245
N ST ++P F GL N FAS + ++ L+ + G ++ LPS
Sbjct: 334 NPSTTSIPSINNQPFPSGLSASNSNFASSSFIPQSVPQLLPIYYQTIFYNGNYYLQQLPS 393
Query: 246 TANKPLTM 269
+ P TM
Sbjct: 394 AS--PPTM 399
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 73 LQWLCQSGFFLSSKMD*NSAMYDLHPATLM 162
L W S F ++ MD + +YD H L+
Sbjct: 134 LCWSVDSNFLIAGAMDNSLRLYDAHTGQLL 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,553
Number of Sequences: 5004
Number of extensions: 49570
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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