Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I08
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0) 68 6e-12
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 33 0.15
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3) 31 0.82
SB_6865| Best HMM Match : NCD3G (HMM E-Value=3) 28 5.8
SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05) 28 5.8
>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 445
Score = 68.1 bits (159), Expect = 6e-12
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +2
Query: 533 LVGPNCPGIIAPXKCKIGIMPAAVHKRGCIGVVSRSGTLT 652
L+GPNCPG+I P +CKIGIMP +H G +G+VSRSGTLT
Sbjct: 15 LIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLT 54
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLHRS 627
+WYH S+ NWYH S + W H S
Sbjct: 265 NWYHPSKTQANWYHPSKTQSNWNHPS 290
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLHRS 627
+WYH ++ NWYH S + W H S
Sbjct: 255 NWYHPTKTQANWYHPSKTQANWYHPS 280
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLHRS 627
+WYH S+ NWYH + + W H S
Sbjct: 465 NWYHPSKTQANWYHPTKTQANWYHPS 490
Score = 32.3 bits (70), Expect = 0.35
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLH 621
+WYH ++ NWYH S + W H
Sbjct: 475 NWYHPTKTQANWYHPSKTKANWYH 498
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLHRS 627
+WYH ++ NWYH + + W H S
Sbjct: 145 NWYHRTKTQANWYHPTKTQANWYHPS 170
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLHRS 627
+WYH ++ NWYH + + W H S
Sbjct: 245 NWYHPTKTQANWYHPTKTQANWYHPS 270
Score = 31.5 bits (68), Expect = 0.62
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLH 621
+WYH S+ NWYH + W H
Sbjct: 485 NWYHPSKTKANWYHPIKTQSNWYH 508
Score = 31.1 bits (67), Expect = 0.82
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLH 621
+WYH ++ NWYH + + W H
Sbjct: 505 NWYHPTKTQANWYHPTKTQANWYH 528
Score = 31.1 bits (67), Expect = 0.82
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLH 621
+WYH ++ NWYH + + W H
Sbjct: 515 NWYHPTKTQANWYHPTKTQANWCH 538
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLH 621
+WYH + NWYH + + W H
Sbjct: 495 NWYHPIKTQSNWYHPTKTQANWYH 518
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTW 615
+WYH S+ NWYH + + W
Sbjct: 345 NWYHPSKTQVNWYHPTKTQANW 366
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 547 LSWYHCSRXV*NWYHASCSAQTWLHRS 627
++W+H S+ N YH + + W HR+
Sbjct: 124 VNWHHPSKTQANLYHPTKTQANWYHRT 150
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 547 LSWYHCSRXV*NWYHASCSAQTWLH 621
++WYH ++ NW AS + W H
Sbjct: 354 VNWYHPTKTQANWNQASKTQANWCH 378
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLHRS 627
+WYH ++ NWYH S + W H S
Sbjct: 500 NWYHPTKTQANWYHPSKTQSNWYHPS 525
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLHRS 627
+WYH ++ NWYH + + W H S
Sbjct: 490 NWYHPTKTQCNWYHPTKTQANWYHPS 515
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLH 621
+WYH ++ NWYH + + W H
Sbjct: 480 NWYHPTKTQANWYHPTKTQCNWYH 503
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTWLHRS 627
+W H S+ NWYH + W H S
Sbjct: 390 NWNHPSKTQANWYHPPKTQSNWYHPS 415
>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
Length = 416
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTW 615
SWYHCS+ H CSA +W
Sbjct: 215 SWYHCSKIPDKERHQFCSANSW 236
>SB_6865| Best HMM Match : NCD3G (HMM E-Value=3)
Length = 281
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 550 SWYHCSRXV*NWYHASCSAQTW 615
SWYHCS+ H C A W
Sbjct: 236 SWYHCSKIPDKQRHQFCPANYW 257
>SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05)
Length = 421
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 99 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFHWKAGLPSTANKPL 263
+SK + + F G T N LT VQ WK+G P T +KPL
Sbjct: 338 ISKILETIPTARAPFHVGMCNTVTFVNQNLTWVDGKTVQSSLWKSGYPKTGDKPL 392
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,443,244
Number of Sequences: 59808
Number of extensions: 408959
Number of successful extensions: 931
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -