Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I08
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical pr...   196   1e-50
AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical ...   190   1e-48
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal m...    27   8.8  
AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    27   8.8  
AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal m...    27   8.8  

>Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical
           protein C05G5.4 protein.
          Length = 322

 Score =  196 bits (478), Expect = 1e-50
 Identities = 91/140 (65%), Positives = 105/140 (75%)
 Frame = +2

Query: 233 RATFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXX 412
           + TFH +Q L+Y TKVVGGV+  KAGTEHLG PVF  V EA+  TGA ASVIYVP     
Sbjct: 45  QGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAG 104

Query: 413 XXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSXLVGPNCPGIIAPXKCKIGIM 592
                     +PL+VCITEG+PQHDMVRVK  LL+QNK+ LVGPNCPGII+  +CKIGIM
Sbjct: 105 SAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIM 164

Query: 593 PAAVHKRGCIGVVSRSGTLT 652
           P  +HKRGCIG+VSRSGTLT
Sbjct: 165 PGHIHKRGCIGIVSRSGTLT 184



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 159 YAETRKNLILTSETKVIVQGFHWKAG 236
           Y  T  NL +  +TKVIVQGF  K G
Sbjct: 21  YNSTYNNLKINKDTKVIVQGFTGKQG 46


>AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical
           protein F23H11.3 protein.
          Length = 321

 Score =  190 bits (462), Expect = 1e-48
 Identities = 90/140 (64%), Positives = 104/140 (74%)
 Frame = +2

Query: 233 RATFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXX 412
           + TFHS+Q L+Y T +VGGVSP KAG  HLG PVFG+V EAK  TGA A+VIYVP  G  
Sbjct: 46  QGTFHSKQMLEYNTNLVGGVSPNKAGQTHLGLPVFGSVAEAKDRTGADATVIYVPAAGAA 105

Query: 413 XXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSXLVGPNCPGIIAPXKCKIGIM 592
                     + LIV ITEG+PQ DMVRVK+ LL+QNKS L+GPNCPGIIA   CKIGIM
Sbjct: 106 RAIHEAMDAEIGLIVAITEGIPQQDMVRVKNRLLKQNKSRLLGPNCPGIIASGDCKIGIM 165

Query: 593 PAAVHKRGCIGVVSRSGTLT 652
           P  +HK+GCIG+VSRSGTLT
Sbjct: 166 PGHIHKKGCIGIVSRSGTLT 185



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 159 YAETRKNLILTSETKVIVQGFHWKAG 236
           Y +TR NL++   TKVIVQGF  + G
Sbjct: 22  YNDTRNNLMINKSTKVIVQGFTGRQG 47


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 448 PHCVHYRRCATT*YGASKTCPLETKQVXT 534
           P C+H   C TT     K C L T Q  T
Sbjct: 133 PTCIHVNACTTTKCSPGKKCALHTVQCFT 161


>AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform c protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 221 KALNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*SIF 111
           K L N  C+    Q F  F     GC SYI +   +F
Sbjct: 256 KRLLNFMCWRFPSQFFQSFFDYYGGCMSYILQLFPLF 292


>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 221 KALNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*SIF 111
           K L N  C+    Q F  F     GC SYI +   +F
Sbjct: 256 KRLLNFMCWRFPSQFFQSFFDYYGGCMSYILQLFPLF 292


>AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform a protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 221 KALNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*SIF 111
           K L N  C+    Q F  F     GC SYI +   +F
Sbjct: 256 KRLLNFMCWRFPSQFFQSFFDYYGGCMSYILQLFPLF 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,532
Number of Sequences: 27780
Number of extensions: 299380
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)