Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H22
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.4  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   7.2  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   9.5  

>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 93  SYISMV*PVTYCQSNSPQL 149
           SY   + P TYC SN PQL
Sbjct: 213 SYPPPLCPATYCPSNPPQL 231


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 116 WLYHAYVRYYLRTVDKRFVPTSSEKDNDT*NKHTN 12
           W +  +V+  L+  D+R  PT   KD    NKH N
Sbjct: 371 WRFRLFVKKLLKNRDQRSTPTELLKDF---NKHGN 402


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 572 YLCAIFFVLLWTSLFVLYPFFF 637
           +L   FF+ + T+LFV +P FF
Sbjct: 248 FLINSFFINVQTNLFVYHPHFF 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,736
Number of Sequences: 5004
Number of extensions: 44190
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)