Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H22
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    28   5.6  
05_06_0022 + 24988363-24988453,24989102-24989325,24989433-249894...    28   7.4  
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922...    28   7.4  

>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
            1414639-1414725,1416244-1416411,1416785-1416958,
            1417662-1417720,1418132-1420154,1420549-1420647,
            1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 430  TPETLVFFVKFATSKKVVLC-SQSNL*PKMAKECLNG 323
            T +    FVK   S    LC  Q NL P    ECLNG
Sbjct: 1000 TTQMRAIFVKTLCSYSTGLCYEQRNLDPAFGPECLNG 1036


>05_06_0022 +
           24988363-24988453,24989102-24989325,24989433-24989494,
           24990219-24990440,24990740-24990869,24991373-24991698,
           24991910-24992051,24992169-24992414
          Length = 480

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 258 INYAKDVIINLSLXINPFISKAVFIKRVVHR 166
           +N  +DVI++ ++   PF+ + + + R VHR
Sbjct: 260 LNEGRDVIMDGTMSWEPFVQQTITMARAVHR 290


>03_05_0398 +
           23790257-23790323,23791116-23791339,23792208-23792275,
           23794738-23794980,23795108-23795237,23797235-23797954
          Length = 483

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 258 INYAKDVIINLSLXINPFISKAVFIKRVVHR 166
           +N  +DVI++ +L   PF+ + + + R VHR
Sbjct: 261 LNEGRDVILDGTLSWEPFVQQTIAMARDVHR 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,500,900
Number of Sequences: 37544
Number of extensions: 222021
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)