Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_H22
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81562-3|CAB04557.1| 352|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL021501-2|CAA16415.2| 356|Caenorhabditis elegans Hypothetical ... 30 1.6
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 29 3.8
U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical pr... 28 5.0
AC024751-4|AAK21505.1| 425|Caenorhabditis elegans Hypothetical ... 28 5.0
Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical p... 28 6.6
AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic ace... 28 6.6
AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical ... 28 6.6
AF025460-7|AAF02170.1| 119|Caenorhabditis elegans Hypothetical ... 27 8.7
AC199160-1|ABO33281.1| 302|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z81562-3|CAB04557.1| 352|Caenorhabditis elegans Hypothetical
protein K03D7.6 protein.
Length = 352
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 553 KSILTYLLVCYFFCTSMDIFICLVSFLF 636
K++ T LL+ + FC +D+F+C V ++
Sbjct: 60 KNVKTSLLINHLFCALLDLFLCTVCTVY 87
>AL021501-2|CAA16415.2| 356|Caenorhabditis elegans Hypothetical
protein Y61B8A.2 protein.
Length = 356
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 553 KSILTYLLVCYFFCTSMDIFICLVSFLF 636
K++ T LLV +FFC +D+ +C +S ++
Sbjct: 60 KNVRTPLLVNHFFCAFLDLTLCTLSTVY 87
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 449 KSRVXYNPRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAY 306
KS PR FC+ C+ F K+ VTK +G K N Y
Sbjct: 407 KSIRSQRPRAVDSFCQYCSLYISLLYFIKKKVTKPAEGDKKSTPTNKY 454
>U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical
protein C15B12.8 protein.
Length = 385
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -3
Query: 158 VSFQLR*ITLAVCYW 114
V+FQ++ I+LAVCYW
Sbjct: 211 VNFQIKPISLAVCYW 225
>AC024751-4|AAK21505.1| 425|Caenorhabditis elegans Hypothetical
protein Y18H1A.1 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 449 KSRVXYNPRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAY 306
KS PR FC+ C+ F K+ VTK +G K +N Y
Sbjct: 350 KSIRSQRPRAVDSFCQYCSLYISLLYFIKKKVTKPAEGDKKPTLSNKY 397
>Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical
protein T09A5.3 protein.
Length = 538
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/92 (17%), Positives = 42/92 (45%)
Frame = +1
Query: 226 KVYNYIFSVINSVINLSXQLNIAHCIS*ALLLNHLNIPLPFLVTDCFVNTVQPSLKLQIS 405
+ + Y+F+V+ + +S +A C+ L + + L++ CF T+ + S
Sbjct: 246 RTFYYVFNVVLPTLLVSFMSLLAFCLPATDLSEKIGLQTTILLSVCFFLTILSEMTPTTS 305
Query: 406 QKKLGFRGLXFTRDFFVXAFXRSYNKILFTLQ 501
+ + G+ F+ F+ A ++ ++ ++
Sbjct: 306 E-AVPLLGVFFSALTFIVAMSTTFTILVLNIR 336
>AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-7 protein.
Length = 538
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/92 (17%), Positives = 42/92 (45%)
Frame = +1
Query: 226 KVYNYIFSVINSVINLSXQLNIAHCIS*ALLLNHLNIPLPFLVTDCFVNTVQPSLKLQIS 405
+ + Y+F+V+ + +S +A C+ L + + L++ CF T+ + S
Sbjct: 246 RTFYYVFNVVLPTLLVSFMSLLAFCLPATDLSEKIGLQTTILLSVCFFLTILSEMTPTTS 305
Query: 406 QKKLGFRGLXFTRDFFVXAFXRSYNKILFTLQ 501
+ + G+ F+ F+ A ++ ++ ++
Sbjct: 306 E-AVPLLGVFFSALTFIVAMSTTFTILVLNIR 336
>AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical
protein C24D10.1 protein.
Length = 482
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -3
Query: 449 KSRVXYNPRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAY 306
KS PR FC+ C+ F K+ VTK G K N Y
Sbjct: 407 KSIRTQRPRAVDSFCQYCSLYISLLYFIKKKVTKPADGDKKSTPTNKY 454
>AF025460-7|AAF02170.1| 119|Caenorhabditis elegans Hypothetical
protein F53A3.7 protein.
Length = 119
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 416 SFFCEICNFKEGCTVFTKQSVTK 348
S+ C++CN +EG F K S K
Sbjct: 38 SYTCKVCNSREGPKTFAKSSYEK 60
>AC199160-1|ABO33281.1| 302|Caenorhabditis elegans Hypothetical
protein CE7X_3.1 protein.
Length = 302
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 19 CLFYVSLSFSEDVGTNRL 72
C+F +SL F +++GTN++
Sbjct: 166 CIFLLSLKFEQEIGTNKV 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,808
Number of Sequences: 27780
Number of extensions: 244130
Number of successful extensions: 613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -