Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H22
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00...    29   2.0  
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina...    27   8.2  
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina...    27   8.2  

>At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 461

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
 Frame = -3

Query: 392 FKEGCTVFTKQSVTKNGKGMF------KWLSNN-AYEIQCAIFNX*LKF--ITELITLKM 240
           F+EG T   + +V+KN K +F      +W++NN A +++  +      F  IT L+TLK+
Sbjct: 103 FEEGVTTLIEFAVSKNVKHLFLDLSEPRWVTNNDAAQLEPGLIKLPESFYKITSLVTLKL 162


>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1065

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 246 KDVIINLSLXINPFISKAVFIKRVVHRTDRKFSAEVNYFGSMLLAI 109
           ++ I N S  +    + ++ IK  V RT RK+  ++NY+G  L  +
Sbjct: 400 QNFIDNHSGALQELSATSLSIKHEVVRTQRKYFEDLNYYGLKLKGV 445


>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1064

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 246 KDVIINLSLXINPFISKAVFIKRVVHRTDRKFSAEVNYFGSMLLAI 109
           ++ I N S  +    + ++ IK  V RT RK+  ++NY+G  L  +
Sbjct: 400 QNFIDNHSGALQELSATSLSIKHEVVRTQRKYFEDLNYYGLKLKGV 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,779,161
Number of Sequences: 28952
Number of extensions: 206619
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)