Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H20
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15440| Best HMM Match : ig (HMM E-Value=5.5e-06)                    27   6.7  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_37316| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_8242| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=7)              27   8.9  

>SB_15440| Best HMM Match : ig (HMM E-Value=5.5e-06)
          Length = 501

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 446 LNTPG*FFQYYFNKREMSFWCIVFXVKLYCECSTSKRXY 330
           LN P  F          SFWCIVF V +    S+ K+ Y
Sbjct: 293 LNEPVVFHDENLADSISSFWCIVFIVLVRDRDSSGKKKY 331


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 337 RFEVLHSQYNFTXNTIHQNDISRL 408
           +FE L SQ+N     I  NDI RL
Sbjct: 133 KFEKLKSQFNSNSKKISMNDIKRL 156


>SB_37316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 84  CIPQKHQNLYNLQYI*ETFTTTTNRYIPIYFSCM--LTKLNALCTKEI 221
           C    H++  NLQ++  T+T  T  Y  +Y  C   L +L   CTK++
Sbjct: 15  CTKDVHRDYNNLQHVQRTYTGITTTY-NMYKGCTQGLQQLTT-CTKDV 60


>SB_8242| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=7)
          Length = 365

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 84  CIPQKHQNLYNLQYI*ETFTTTTNRYIPIYFSCM--LTKLNALCTKEI 221
           C    H++  NLQ++  T+T  T  Y  +Y  C   L +L   CTK++
Sbjct: 56  CTKDVHRDYNNLQHVQRTYTGITTTY-NMYKGCTQGLQQLTT-CTKDV 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,294
Number of Sequences: 59808
Number of extensions: 243451
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)