Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H20
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm rec...    31   0.36 
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    30   1.1  
U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    29   1.9  
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      29   1.9  
AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm rec...    28   3.4  
AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm rec...    28   3.4  
AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm rece...    27   5.9  

>AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 164 protein.
          Length = 342

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +3

Query: 156 RYIPIYFSCMLTKLNALCTKEIKTK*HVXHRTLLLLAKTXSWLIRIMMGYMVSLQICAVX 335
           RY+ IYFSC     +  C   +    H   ++  +LA   +WL+     + +   +C   
Sbjct: 42  RYLMIYFSCFAMFFST-CDVIVGPFIHSFQKSFCVLADRTNWLLGETTQFALICVLCGCF 100

Query: 336 PLRSTTLTVQFHXKYY 383
            +  T   + F  +Y+
Sbjct: 101 GVTITFFVIHFVFRYF 116


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 319 CKE--TIYPIIIRISHXYVFARSNSVLWXTCYFVLISLVHNAFS 194
           CK+   +Y + +R+    + A+SN+ LW    F LI+ +HN FS
Sbjct: 676 CKDETNLYELSLRV--LVLCAQSNATLWRRNGFSLINQIHNYFS 717


>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -1

Query: 280 HXYVFARSNSVLWXTCYFVLISLVHNAFSLVSIQL 176
           + +VFA + +V+W +   +  ++++N FSL+S+ L
Sbjct: 58  YVHVFASTFTVMWFSRNHLQSAIIYNMFSLISLAL 92


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -1

Query: 280 HXYVFARSNSVLWXTCYFVLISLVHNAFSLVSIQL 176
           + +VFA + +V+W +   +  ++++N FSL+S+ L
Sbjct: 58  YVHVFASTFTVMWFSRNHLQSAIIYNMFSLISLAL 92


>AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical
           protein Y9C9A.5 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/76 (21%), Positives = 37/76 (48%)
 Frame = +3

Query: 156 RYIPIYFSCMLTKLNALCTKEIKTK*HVXHRTLLLLAKTXSWLIRIMMGYMVSLQICAVX 335
           +Y+ IYF C  + L ++    ++   H    +  ++ K         +G+++ L +C   
Sbjct: 41  KYLLIYFCCF-SMLYSILYIIVEPYIHSHGSSYFMMMKLGILKSYPEVGFILILLLCGCF 99

Query: 336 PLRSTTLTVQFHXKYY 383
            +  TT+++QF  +Y+
Sbjct: 100 AVSITTISIQFVFRYF 115


>AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform b protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/78 (20%), Positives = 35/78 (44%)
 Frame = +3

Query: 150 TNRYIPIYFSCMLTKLNALCTKEIKTK*HVXHRTLLLLAKTXSWLIRIMMGYMVSLQICA 329
           T +Y+ IYF C  + L ++    ++           ++    SW     +G++    +C 
Sbjct: 39  TYKYLLIYFCCF-SILYSILDIIVEPFIQSHGSCFFMMMNLGSWKSYPEVGFLFVTILCG 97

Query: 330 VXPLRSTTLTVQFHXKYY 383
              +  TT+++QF  +Y+
Sbjct: 98  CFAVSITTISIQFVFRYF 115


>AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform a protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/78 (20%), Positives = 35/78 (44%)
 Frame = +3

Query: 150 TNRYIPIYFSCMLTKLNALCTKEIKTK*HVXHRTLLLLAKTXSWLIRIMMGYMVSLQICA 329
           T +Y+ IYF C  + L ++    ++           ++    SW     +G++    +C 
Sbjct: 39  TYKYLLIYFCCF-SILYSILDIIVEPFIQSHGSCFFMMMNLGSWKSYPEVGFLFVTILCG 97

Query: 330 VXPLRSTTLTVQFHXKYY 383
              +  TT+++QF  +Y+
Sbjct: 98  CFAVSITTISIQFVFRYF 115


>AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 168 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/78 (19%), Positives = 36/78 (46%)
 Frame = +3

Query: 150 TNRYIPIYFSCMLTKLNALCTKEIKTK*HVXHRTLLLLAKTXSWLIRIMMGYMVSLQICA 329
           T +Y+ +YF C  + L ++    +    H    +  ++ K         +G+++   +C 
Sbjct: 39  TYKYLLVYFCCF-SMLYSILDIIVGPVIHSHGSSFFMMMKLGILKNHPEVGFLLVSLLCG 97

Query: 330 VXPLRSTTLTVQFHXKYY 383
              +  TT+++QF  +Y+
Sbjct: 98  CFAVSITTISIQFVFRYF 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,210,796
Number of Sequences: 27780
Number of extensions: 191359
Number of successful extensions: 425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)