Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H16
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2), puta...    30   1.5  
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr...    29   2.0  
At4g31570.1 68417.m04483 expressed protein                             28   4.7  
At3g11010.1 68416.m01329 disease resistance family protein / LRR...    28   4.7  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    28   6.2  
At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64...    27   8.2  
At1g68940.1 68414.m07891 armadillo/beta-catenin repeat protein-r...    27   8.2  

>At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2),
           putative similar to Swiss-Prot:P33331 nuclear transport
           factor 2 (NTF-2) (Nuclear transport factor P10)
           [Saccharomyces cerevisiae]
          Length = 127

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 440 NKSXXRQRARTFVTWYKQMIDNERQNLALYLADDAFLEWFGRTIKTRKKVSAFLK 604
           NK    + A  FV  Y  + DN+R +L+      + L + G+TI     +S  LK
Sbjct: 5   NKGIEEEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLK 59


>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
           protein / kinesin motor family protein kinesin,
           Syncephalastrum racemosum, AJ225894
          Length = 941

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/112 (20%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
 Frame = +3

Query: 84  CFTAVEDCKMNS-TVSDDLTRENSASEIS--KCIKDLSANNRNLSLLHKELLEINLSVKT 254
           C  +  + + N+ T S  L +EN+  E+S  + +KDL        L+H + +++ + +K 
Sbjct: 492 CENSFAEAEKNAVTRSKFLEKENTRLELSMKELLKDLQLQKDQCDLMHDKAIQLEMKLKN 551

Query: 255 YVQESKKRLQGLRLDLAHEARSSHQVVELLTEK*QCQQSQ----QHRANEIK 398
             Q+  +        LA  ++   + +  L ++ + +Q++    +H+  E+K
Sbjct: 552 TKQQQLEN-SAYEAKLADTSQVYEKKIAELVQRVEDEQARSTNAEHQLTEMK 602


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/85 (24%), Positives = 40/85 (47%)
 Frame = +3

Query: 141  RENSASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKKRLQGLRLDLAHEARS 320
            R+N    +++    L   +  L+     L+E+   +KTY+ E+ +R++ L  +L++   S
Sbjct: 1378 RDNVKQSLAEASAKLQKCSEELNSKDARLVEVEKKLKTYI-EAGERVEALESELSYIRNS 1436

Query: 321  SHQVVELLTEK*QCQQSQQHRANEI 395
            +      L E    + S  HR  EI
Sbjct: 1437 A----TALRESFLLKDSLLHRIEEI 1457


>At3g11010.1 68416.m01329 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 894

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 105 CKMNSTVSDDLTRENSASEISKCIKDLSANNRNLSLLHKEL 227
           C++ S  + DL+  N +  I +C+++L +N   L+L    L
Sbjct: 516 CELRSLYTLDLSDNNFSGSIPRCMENLKSNLSELNLRQNNL 556


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 126  SDDLTR--ENSASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKKRLQGLRLD 299
            S ++TR  E    +  KC + LSA N+++    ++LL    S++  + ++KK  + + ++
Sbjct: 2114 SKEITRNLEVDTEKARKCQEKLSAENKDIRAEAEDLLAEKCSLEEEMIQTKKVSESMEME 2173

Query: 300  L 302
            L
Sbjct: 2174 L 2174


>At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64194
           Lysosomal acid lipase/cholesteryl ester hydrolase
           precursor (EC 3.1.1.13) {Rattus norvegicus}; contains
           Pfam profile PF04083: ab-hydrolase associated lipase
           region
          Length = 418

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 512 QNLALYLADDAFLEWFGRTIKTR 580
           QNL L LAD  F  W G T  TR
Sbjct: 119 QNLPLILADQGFDVWMGNTRGTR 141


>At1g68940.1 68414.m07891 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein ;
           contains Pfam profile PF04564: U-box domain
          Length = 1033

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 228 LEINLSVKTYVQESKKRLQGLRLDLAHEARS 320
           L  N+ +KT +QE K R +  R+ +AH A S
Sbjct: 302 LSANVVLKTIIQEWKVRNEAARIKVAHAALS 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,373,964
Number of Sequences: 28952
Number of extensions: 229333
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)