Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H11
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    32   0.081
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   5.3  

>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 31.9 bits (69), Expect = 0.081
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 23  F*KKRFFSYLMNIXCFNFDNQXPQHHKFVVCLKLYVYLFRLIFI 154
           F +KRFF +L+N  C++ D      H   +C K Y YL  L++I
Sbjct: 627 FDRKRFFDFLVNTQCYSLD------HAAQIC-KQYNYLDELVYI 663


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 343 VHFLXLHIDYYDSDHPIHVLPH 278
           +H    H+D Y  DHPI +  H
Sbjct: 203 MHRFLFHLDEYTPDHPIFLTMH 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,620
Number of Sequences: 5004
Number of extensions: 44385
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)