Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H11
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42015| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)               28   7.4  

>SB_42015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +3

Query: 519 WPTY*LNGLSLGGVKVSEVQAMVENHLXDMILKTFDPKKAD 641
           W       LS  G  V +V+ +VENHL D+I+K FDPK+AD
Sbjct: 132 WDAPCSGALSAAGSNVHDVEQLVENHLKDLIIKHFDPKRAD 172


>SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)
          Length = 821

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 11  CLFMF*KKRFFSYLMNIXCFNFDNQ 85
           C F+F  + FF +L++   FN+DNQ
Sbjct: 52  CCFLF-HENFFQFLVSHNIFNYDNQ 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,888,903
Number of Sequences: 59808
Number of extensions: 292218
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)