Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_H09
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29470.1 68414.m03605 dehydration-responsive protein-related ... 33 0.22
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 31 0.50
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.50
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti... 30 1.5
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 30 1.5
At5g20540.1 68418.m02439 expressed protein 29 2.7
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 3.5
At1g23230.1 68414.m02906 expressed protein 29 3.5
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 4.7
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 28 4.7
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 28 6.2
At1g19000.2 68414.m02364 myb family transcription factor similar... 28 6.2
At1g19000.1 68414.m02363 myb family transcription factor similar... 28 6.2
At5g12410.1 68418.m01459 THUMP domain-containing protein contain... 27 8.2
At2g20950.1 68415.m02471 expressed protein 27 8.2
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 8.2
>At1g29470.1 68414.m03605 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 32.7 bits (71), Expect = 0.22
Identities = 24/107 (22%), Positives = 48/107 (44%)
Frame = +1
Query: 112 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 291
KD+ +D KS+ + D E V+ + T+ + + EK +S++
Sbjct: 57 KDVDTTKSDFKSEEVDRGSKSFPDEKNEETEVVTETNEEKTDPEKSGEENSGEKTESAE- 115
Query: 292 KHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKN 432
+ E +KN D+ EK ++ D + +KTQ++ ++ E K+
Sbjct: 116 ERKEFDDKNGDGDRKNGDGEKDTESESDETKQKEKTQLEESSEENKS 162
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 31.5 bits (68), Expect = 0.50
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +1
Query: 55 HQKYIDSQLACSVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDV 228
H K+ + S SD+PS L+D+ ++ +LK L+G + VDTN +AE
Sbjct: 521 HPKWQRVEFENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTNLDAEDRAAERK 580
Query: 229 A-TEKTQKSLFD---GIEKFDS 282
A EK +L EKFDS
Sbjct: 581 AEVEKAVSTLAQKSKPTEKFDS 602
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.5 bits (68), Expect = 0.50
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 178 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 357
R+ + NE+ + + E E+ K+ + EK Q+K + +E+N K+V+ +
Sbjct: 744 REKEENERRIKEAREKAELEQRLKATLEQEEK--ERQIKERQEREENERRAKEVLEQAEN 801
Query: 358 HQNLLDGVEHFD-KTQMKHTTTEEKN 432
+ L + +E + + ++K T +E+N
Sbjct: 802 ERKLKEALEQKENERRLKETREKEEN 827
>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein contains Pfam profile
PF02493: MORN repeat
Length = 871
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 235 EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT 414
EK+ K + DG+EK+ + K E +++ + ++V AE L + +E D+ K
Sbjct: 581 EKSVKPMLDGLEKWTEEKKKAYEERKEMIQQELELVEAEIC---LEEAIEDMDEELKKKE 637
Query: 415 TTEEK 429
EEK
Sbjct: 638 QEEEK 642
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 119 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRS 274
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSRS
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRS 246
>At5g20540.1 68418.m02439 expressed protein
Length = 384
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 58 QKYIDSQLACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 237
Q++ DS L ++ TP + + T+ S +S RD D +E++ + +A DV E
Sbjct: 274 QQFYDSGL---LNSTPKVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNE 330
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 88 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 252
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 562 PLWGAGSSRTFPCASA*WDRSSRC-RSGICSFPSP 461
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 240 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 121
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Frame = +3
Query: 312 EEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 491
E +R +SPP PLG + L ++ DD +E +S G G +
Sbjct: 446 EREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQARGNGVAKGEGN 505
Query: 492 HRELRSH-*AEAHGNVREEPAPHKGRH*AREISLNH---YFITVTRKCI 626
+++ E + ++ + KG+H +R + + Y TV R+ +
Sbjct: 506 GNKVKGEAQEEVDDDEDDDVSKGKGKH-SRHVEVRRDCPYLDTVNRQVL 553
>At5g07660.1 68418.m00877 structural maintenance of chromosomes (SMC)
family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 27.9 bits (59), Expect = 6.2
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +1
Query: 7 AVPTESLSARIFYPLPHQKYIDSQLACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV 186
A PT S++ + QK I+ + + SLK+ A +LK+ E S ++
Sbjct: 710 ASPTSSVNELHLEIMKFQKEIEEKESLLEKLQDSLKEAELKANELKASYENLYESAKGEI 769
Query: 187 DTNEKI--VLPSAED-VATEKTQKSLFDGIEKFD-SSQLKHTET 306
+ EK L ED + + +T+K+ ++ I K ++K ET
Sbjct: 770 EALEKAEDELKEKEDELHSAETEKNHYEDIMKDKVLPEIKQAET 813
>At1g19000.2 68414.m02364 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 238 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 375
+ + SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
>At1g19000.1 68414.m02363 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 238 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 375
+ + SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
Pfam profile PF02926: THUMP domain
Length = 376
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 187 DTNEKIVLPSAEDVATEKTQKSLFDGI-EKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQ 363
D ++ +V D+ EK S +G+ ++ + ++ + E L + + V E+
Sbjct: 110 DGDKAVVSEGGNDLVNEKEIAS--EGVNDQVNEKEIASEGSCEVKQLAENETVKEEEDKG 167
Query: 364 NLLDGVEHFDKTQMKHTTTEEKNPL 438
N +G D+ K T TEE NPL
Sbjct: 168 NQKNGG---DEPPRKKTCTEEANPL 189
>At2g20950.1 68415.m02471 expressed protein
Length = 520
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 441 PDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 599
PDR RS E +++ ER E ++ + H PAP+ R+ S Y
Sbjct: 120 PDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERY 172
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 243 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 118
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.129 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,415,868
Number of Sequences: 28952
Number of extensions: 285851
Number of successful extensions: 828
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -