Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_H08
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.10
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 28 0.97
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.7
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.7
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.7
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.7
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 3.0
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.2
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 5.2
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 6.8
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 6.8
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 25 6.8
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 9.0
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.0
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 31.5 bits (68), Expect = 0.10
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 234 RCLNLFIYFGIFFLSLSDRCDLETSTT*GVIIHF*AF--LNFFWYLLVSFVIFIIR*TML 61
RCL LF +F +FFLS S + I++F +F L+F ++ + +F+ L
Sbjct: 114 RCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSL 173
Query: 60 SFANSITITYI 28
S S+ I ++
Sbjct: 174 SHLLSLAILFL 184
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 28.3 bits (60), Expect = 0.97
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +1
Query: 127 CSEMYYHPLRRGSFQVTSIR----QAQKKYPKVDKKVQAAAESLAARGFLRPTKSWDPPT 294
C ++ LR G T I+ +Q K+ + K A+ +LAA G + +S++PP
Sbjct: 1441 CGQLLSSKLRLGPLLTTVIKLVIEYSQAKHAAIILK-DASNYTLAAHGNVEKAESFEPPV 1499
Query: 295 NINETILKI 321
++++ +KI
Sbjct: 1500 ILSQSDVKI 1508
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 356 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 457
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 356 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 457
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 356 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 457
L +W L FSK++ Q ++CL F L Q +
Sbjct: 83 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 117
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 356 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 457
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 367 DTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFY 474
+ + +K Y++TG V ++ L I DDL +Y
Sbjct: 112 EARLQAVKLAYQKTGRIVYDAPLQNIHNWDDLYNYY 147
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 391 ACYEETGHSVPNSLL--HTIETVDDLTEFYKTPVYTTTP 501
ACY + + + L +T+ T T F TP TTTP
Sbjct: 913 ACYNPSQYVCSDGSLSPNTVTTTKATTTFTPTPTTTTTP 951
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +1
Query: 316 KICATCGLNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYK-----T 480
+ C C S F L +KF + + YE + +SLL+ T+ ++ E +
Sbjct: 212 EFCQICEREIQSWFFELHSKFCLSTSTYESVVQAAQDSLLYFRSTLLEIQEGMQKDSSLV 271
Query: 481 PVYTTTP 501
PVY P
Sbjct: 272 PVYKNEP 278
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 541 VDFWVDPLTSEHQTV*LCTQVFCKILLGHQL 449
+DFW +PL EH V + Q ++ H +
Sbjct: 266 LDFWNEPLYKEHNGVFVEQQALSHMIYSHPI 296
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 148 GDNTFLSIS*FFLVSTSQFCYIYNSLNNVIFREQH 44
GD+ +S S L S+ + NSL+N F E H
Sbjct: 877 GDDGAISRSILLLEQISENSVVVNSLHNYFFAEAH 911
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 424 NSLLHTIETVDDLTEFYKTPVYTTTPFDAL-KLMDLPKNLHVQKDYVXFHPDTDTLF 591
NS I +D L E+ + F + KL+D LHV + V HP + TLF
Sbjct: 58 NSTTPCIYALDSLLEYQQNEEAYEKNFQFIQKLID--DLLHVIEGLVLIHPKSQTLF 112
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +1
Query: 337 LNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPV 486
LN N E + K ++ ++ HS+ S L +++ + D+T + + V
Sbjct: 49 LNSNKTTEGEEAKLSIY-----DSSHSISKSQLESVKKISDITGYNEAQV 93
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 178 SIRQAQKKYPKVDKKVQAAAESLAARGFLRPTKSWDPPTN 297
++R+A +P VD + + ++ + +RPT PP N
Sbjct: 745 AVREADVYHPHVDTSIDSLSQISSQPFEMRPTAIPPPPKN 784
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,605
Number of Sequences: 5004
Number of extensions: 55604
Number of successful extensions: 147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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