Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H08
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23466| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_5972| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.77 
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        30   1.8  
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)               29   2.4  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)           29   3.1  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           29   4.1  
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    28   5.4  
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                    28   5.4  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_23466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +1

Query: 295 NINETILKICATCGLNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFY 474
           NI++ + K     G +  S+   L  KF VL+ CY+  G  +PN  L  +  V D+  +Y
Sbjct: 86  NIDDIVSKSLPKDGCDIKSD---LSLKFKVLEECYKVFGLRIPNPNLGKVTNVGDIFNYY 142

Query: 475 ---KTPVYTTTPFDALKLMDLPKNLHV 546
              K P   T  F ++   DLP NL +
Sbjct: 143 SSFKKPSERT--FPSIDPQDLPPNLTI 167


>SB_5972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 35  VMVMLFAKDNIV*RIINITKLTSRYQKKLRNAQKCIITPY 154
           V + L A+D++  R I       R+ ++ RN  +CI TPY
Sbjct: 102 VNIYLHARDDVTARAIYSMVSRGRFWRRFRNRIRCIATPY 141


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 507 CSEVNGSTQKSTCSKRLCXISSRYGHFIQW 596
           CS    ST  S+C    C ++  YG++  W
Sbjct: 703 CSAFGPSTMSSSCQDEPCPVNGNYGYWSSW 732


>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
          Length = 1481

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
 Frame = +1

Query: 127  CSEMYY--------HPLRRGSF-QVTSIRQAQKKYPKVDKKVQAAAESLAARGFLRPTKS 279
            CSE Y+         P +  +F Q+ +  QA +   K DKKV+ + E++ A+GF    K+
Sbjct: 1303 CSECYHDNQDSRKIRPQKHVTFSQMDTPLQATQLPEKDDKKVEGSPEAVVAKGFQPKVKT 1362

Query: 280  WDPPTNINETILKIC 324
                  +N   + +C
Sbjct: 1363 STLDDEVNSDDIDLC 1377


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 104  RYQKKLRNAQKCIITPYV--VEVSRSHLSDKLKKNIPK*IKRFKQRQNP*RQEA 259
            +Y+K LR+  + ++  +   +++   HL DK K+ I   +K  K+R+   R EA
Sbjct: 2902 KYRKFLRDEMQSVVNDFHEGMKIKMGHLKDKHKQEIKCFLKILKERRMHARNEA 2955


>SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)
          Length = 436

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 127 CSEMYYHPLRRGSFQVTSIRQAQKKYPKVDKKVQAAAESLAARGFLRPTKSWD 285
           CSE+Y  P      + + I+  + + P+ DK     A   + R + RP    D
Sbjct: 175 CSEVYSDPFSLAQHKCSGIQHTEHRCPECDKVFSCPANLASHRRWHRPRSPHD 227


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 613 WEKRRRH*IKCPYLDEX*HNLFEHVDFWVDPL 518
           W+KRR   ++     E  H LFE +  W+D L
Sbjct: 75  WQKRRGELVEVKVTSEQYHKLFEVILVWLDEL 106


>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 446  SIVCKSELGTLWPVSS*QALRTVNFVSNASNSEFPFNPHVAHI 318
            +I C++ELG  +P+S    LR +NF +  S +   F  H A++
Sbjct: 920  NIACRAELGR-YPLSIDAKLRVLNFHNKRSEAHSNFLSHDAYL 961


>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 436 HTIETVDDLTEFYKTPVYTTTPFD---ALKLMDLPKNLHVQKDY 558
           H  + V+D  E  + PVY +  FD   A +  D+   LHVQ  Y
Sbjct: 119 HKEQVVEDFVEIVQVPVYVSKNFDITIAFRCTDI--RLHVQVHY 160


>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +1

Query: 337 LNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFY---KTPVYTTTP 501
           L  N  F+++    TVL++C +  GH   + L+   E +D++T+     ++PV+   P
Sbjct: 41  LTNNKNFKSVLLTLTVLESCIKNCGHRF-HVLVAKKEFLDEMTKLLSPKQSPVHAPAP 97


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 271  TKSWDPPTNINETILKICATCGLNGNSE 354
            T+ W+ P   +E  L+IC     NGNSE
Sbjct: 1056 TRGWETPLIRDEIYLQICKQTTDNGNSE 1083


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +1

Query: 370  TKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPV-YTTTPFDALKLMDLPKNLHV 546
            T F +L +    T   VP +L   I T   LT F+++ + Y+T     +   +LP    V
Sbjct: 905  TTFEILSSLSSFTSAHVPTTLFEVILT-PSLTSFFESTIPYSTLTLSTISDTNLPNITTV 963

Query: 547  QKDYVXFHPDTDTLFNGVSAFP 612
             +  V   P   TL   + + P
Sbjct: 964  NRTTV---PTNSTLVEILPSMP 982


>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 345 SI*STCCTYFQNCFIDVCRWIP*LGGT*EASCR*GFC-RCLNLFIYFGI 202
           SI S    ++ NCF   C+W P    T +  C   FC  CL   +Y  I
Sbjct: 77  SIVSQPKAFYSNCFCAACKWRP---CTKQGEC---FCYNCLGFLLYAAI 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,356,110
Number of Sequences: 59808
Number of extensions: 395674
Number of successful extensions: 955
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)