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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H08
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20150.1 68414.m02520 subtilase family protein similar to sub...    29   2.5  
At5g08240.1 68418.m00967 expressed protein                             29   3.4  
At4g10360.1 68417.m01701 expressed protein                             29   3.4  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    28   4.4  
At4g38640.1 68417.m05469 choline transporter-related contains we...    28   5.9  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    27   7.8  

>At1g20150.1 68414.m02520 subtilase family protein similar to
           subtilisin-type protease precursor GI:14150446 from
           [Glycine max]
          Length = 780

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 234 RCLNLFI-YFGIFFLSLSDRCDLETSTT*GVIIH 136
           RCL + I +F  FFLS+  +C  ETS +   II+
Sbjct: 3   RCLTITIMFFMFFFLSVIQKCKSETSKSGDYIIY 36


>At5g08240.1 68418.m00967 expressed protein 
          Length = 258

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 522 GSTQKSTCSKRLCXISSRYG 581
           GS ++ TC++R+  ISSRYG
Sbjct: 139 GSFKEDTCTERISSISSRYG 158


>At4g10360.1 68417.m01701 expressed protein
          Length = 266

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 212 TLGYFF*ACLIDVTWKLPRRKG**YISEHFLIFFGIY*SV 93
           +LGYF  A L  + W  P   G  Y+  HFL  F I  SV
Sbjct: 108 SLGYFL-ADLAMIFWYFPTLGGIEYVFHHFLSMFAIILSV 146


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
            identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 86   ITKLTSRYQKKLRNAQKCIITPYVVEVSRSHLSDKLKKNIPK 211
            +T+   RY+K +  A K + T     + R+H  +K+ K I K
Sbjct: 1190 LTEKQGRYEKTVMEASKILWTATNWVIERNHEKEKMNKEIEK 1231


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 231 CLNLFIYFGIFF-LSLSDRCDLETSTT*GVIIHF*AFLNFFWYLLVSFVIFII 76
           CL LF+ F IFF +     C L +S +  + + +   +  F +L++  +++II
Sbjct: 175 CLPLFVLFPIFFNVYWFVACTLSSSCSDALPLAYRILVLVFVFLIIGIIVWII 227


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 PPTNINETILKICATCGLNGN-SEFEALDTKFTVLKAC 396
           P T + ++I   C TCGLNG+ S +  L   FT    C
Sbjct: 253 PLTLMPKSISFTCTTCGLNGDRSPYVCLPCDFTSHNDC 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,562,333
Number of Sequences: 28952
Number of extensions: 272139
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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