Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H05
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             183   1e-46
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            32   0.47 
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  183 bits (445), Expect = 1e-46
 Identities = 84/131 (64%), Positives = 98/131 (74%)
 Frame = +2

Query: 260  LLVNGNKIAVFSERDPKAIPWGKAGAEYVVXSTGVFTTTDKASAHLEGGAKKVIISAPSA 439
            L++NG  ++VF+ +DP  IPWG+ GA+YVV STGVFTT +KA  HL+GGAKKVIISAPSA
Sbjct: 840  LVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFTTLEKAGFHLKGGAKKVIISAPSA 899

Query: 440  DAPMFVVGVNLXAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 619
            DAPMFV+GVN   YDPS  V+SNASCTTNCLAPL KVI+DNF + EGLM           
Sbjct: 900  DAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKVINDNFGLEEGLMTTIHAYTATQK 959

Query: 620  XXDGPSGKLWR 652
              DGPS K WR
Sbjct: 960  TVDGPSAKNWR 970



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +1

Query: 190 VYLFKYDSTHGRFKGSVEVQDGFL 261
           VY+FKYDSTHGRFKG+VE +DG L
Sbjct: 817 VYMFKYDSTHGRFKGTVEAKDGKL 840


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 429 LPVLMPPCLLWVLTXKLMTPLLRSSQMLL 515
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 32  SVIQQIFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 154
           S+ + +FY   I+C+KL S+D+ AL  + S  LL   +K S
Sbjct: 24  SLPKTVFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +3

Query: 336 LNMLXSLLVSLPLQIKHLLTWREVLKKLLYQLP--VLMPPCLLWVLTXKLMTPLLRSSQM 509
           L +L  L V +PLQ+   LT  +VL  L   LP  VL+P  +L  L   +   +L   Q+
Sbjct: 419 LQVLIPLQVLIPLQV---LTPLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQV 475

Query: 510 LLAPQTVLPHLQRLFMI 560
           L  PQ + P LQ L ++
Sbjct: 476 LTPPQVLAP-LQVLILL 491


>SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -3

Query: 360 PVDXTTYSAPAFPHGMALGSLSEKTAILLPLTSKESILNLN--TALKTAMGGIILEKINH 187
           P+  + ++AP  PHG++  +  + T  L   T  +  L ++  TA    +G       +H
Sbjct: 240 PLGLSKHTAPDHPHGLSKHTAPDHTIGLYKRTGPDHTLGVSKRTAPDHPLGVSKRTAPDH 299

Query: 186 IVKTDERVIYSDHLSSLFNRSTEHQTANAAK 94
            +   +R    DH   LF R+    T   +K
Sbjct: 300 TLGLSKRTA-PDHTLGLFKRTGPDHTHGVSK 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,684,215
Number of Sequences: 59808
Number of extensions: 415968
Number of successful extensions: 945
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)