Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H04
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    25   0.38 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.2  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   3.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.1  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 530 FLXIFLFKVPSCFFIKFFQL 471
           +L IF+ ++P CFF++  +L
Sbjct: 180 YLLIFVQQIPFCFFVRVIRL 199


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 194 VCSHLCDGSNVHHHHIFNFRIFLLIKSTRQRHLVCLFNS 78
           +CS      ++ H  I+     LL+KS  Q H  C   S
Sbjct: 4   ICSGNLGSMDIKHEMIYREDDVLLVKSEPQLHSPCATGS 42


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +3

Query: 342 IDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHYETSEQLEELYKKTAWYFEXKY 521
           I+L K   S  D++K     A      ++L H   +L+Y  S + E        +F+ ++
Sbjct: 128 INLLKHYQSTTDLHKKIRYSAFGMIFVALLEHCFSMLNYVYSSKCENNSTGVEHFFKKQF 187


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 8   SVNVNNVDLFHHILS 52
           +VNV+N+DL+  I +
Sbjct: 194 AVNVDNIDLYEEIFN 208


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 8   SVNVNNVDLFHHILS 52
           +VN++N+DL+  I +
Sbjct: 201 AVNIDNIDLYEEIFN 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,806
Number of Sequences: 336
Number of extensions: 2367
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)