Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H04
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...   154   8e-39
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    29   0.40 
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   5.0  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    25   6.5  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   8.7  

>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score =  154 bits (374), Expect = 8e-39
 Identities = 81/155 (52%), Positives = 101/155 (65%)
 Frame = +3

Query: 108 SCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLXYNNIEGMXXXXXXXXXXXXXXNKLIR 287
           SCR Y+ ++PEV+++V+VNVR I EMGAYV LL Y+NIEGM               K IR
Sbjct: 5   SCRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIR 64

Query: 288 VGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHYETS 467
           VG+ E VVV+RVDKEKGYIDLSKRRVS ED+ KC ER+ K+KAV+SI+RH+A     + +
Sbjct: 65  VGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAE----KHN 120

Query: 468 EQLEELYKKTAWYFEXKYXKKASAYDFFKQAAVDP 572
             LE +Y    W     Y K   AYD FK A  +P
Sbjct: 121 VPLETMYTTIGW---PLYRKYGHAYDAFKLAISNP 152


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 495 TAWYFEXKYXKKASAYDFFKQAAVDPSVLDEC 590
           T +YFE  +     A D F Q  +DP  L+EC
Sbjct: 107 TNYYFEVSHDALYGALDRFAQFFIDPLFLEEC 138


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 471 QLEELYKKTAWYFEXKYXKKA-SAYDF 548
           Q+EEL  KT WY+  +  K   S Y++
Sbjct: 470 QIEELDAKTPWYYHYELEKDVKSTYEY 496


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 176 DGSNVHHHHIFNFRIFLLIKSTRQRH 99
           DG+ +  HH F+FR +  +K  R+++
Sbjct: 24  DGTLLDKHHRFHFRTYRAMKYIREKY 49


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 427 SCDMXXXXXIMKLLSNWKNFIKKQLGTLXRNIXRKPRHMTSS 552
           +C M       KLL+ ++N + +QL  L       P  MTS+
Sbjct: 615 NCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +3

Query: 297 TEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHYETSEQL 476
           TEP+V ++   E+  +     R S   +    E + KAK        +    H ETS+ +
Sbjct: 606 TEPLVGLKTASEED-LPTWYYRHSLVFVSSSNECWKKAKRAKRRYGRLMQSEHTETSDMM 664

Query: 477 EELYKKTAWY 506
           E+ Y+    Y
Sbjct: 665 EQHYRAVTQY 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,977
Number of Sequences: 5004
Number of extensions: 40354
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)