Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H04
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.)             223   9e-59
SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)             30   1.7  
SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score =  223 bits (545), Expect = 9e-59
 Identities = 110/168 (65%), Positives = 125/168 (74%)
 Frame = +3

Query: 99  MPLSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLXYNNIEGMXXXXXXXXXXXXXXNK 278
           MP +CRFY+  YPEV+DVVMVNVRSIAEMGAYV+LL YNNIEGM              NK
Sbjct: 1   MP-NCRFYKHIYPEVDDVVMVNVRSIAEMGAYVNLLEYNNIEGMILLSELSRRRIRSINK 59

Query: 279 LIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHY 458
           LIRVG+ E VVVIRVDKEKGYIDLSKRRVS E++ KC E++ KAK V SILRH A +L Y
Sbjct: 60  LIRVGRNECVVVIRVDKEKGYIDLSKRRVSPEEVKKCEEKFTKAKTVYSILRHCAEILGY 119

Query: 459 ETSEQLEELYKKTAWYFEXKYXKKASAYDFFKQAAVDPSVLDECGLHE 602
           ET +Q EELY+KTAWYF+ KY    S+Y+ FK A  DPSVLDE  L E
Sbjct: 120 ETDKQFEELYEKTAWYFDDKYKTPGSSYEAFKLAVADPSVLDELSLDE 167


>SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)
          Length = 636

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = -3

Query: 287 SDQFVNGSDTSSGKLR*QDHALYIIVX*KVDVCSHLCDGSNVHHHHIFNFRIFLLIKSTR 108
           SD F + + TS+ K    D+AL++ +  ++   SH+C   N+ H  +     FLL + T 
Sbjct: 497 SDGFASLNTTSATK----DNALFLNIIQQLPTRSHVCMACNILHLIVQKVSGFLLRRHTT 552

Query: 107 QRHLVCLFNSFLSVKY*IKKEYDE 36
            R    + ++ LS    I+   DE
Sbjct: 553 SREPPEVISNCLSELTDIETRTDE 576


>SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +3

Query: 318 RVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHYETSEQLEELYKKT 497
           RVD   G  D S   +  ++I K   R A    +++ L HV  + + +T++ +  L +  
Sbjct: 362 RVDVVFGIPDSSDLALEFDNIKKFYTRLAGLLTISNRLAHVGIVRYSDTADMILPLDES- 420

Query: 498 AWYFEXKYXKKASAYDFFKQAAVDPS 575
             Y+      K S       + VDPS
Sbjct: 421 --YYRDSVVNKISNMKLSGTSGVDPS 444


>SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 351 SKRRVSAEDIYKCTERYAKAKAVNSI 428
           SK R++ ED+ KCTER  +     SI
Sbjct: 300 SKERITDEDLVKCTERLHEVDEHTSI 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,938
Number of Sequences: 59808
Number of extensions: 313331
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)