Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H04
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical...   199   1e-51
Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81546-8|CAB04456.1|  676|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AY313179-1|AAP79304.1|  782|Caenorhabditis elegans myotubularin-...    27   7.9  
AY313177-1|AAP79302.1|  676|Caenorhabditis elegans myotubularin-...    27   7.9  

>AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical
           protein Y37E3.10 protein.
          Length = 342

 Score =  199 bits (486), Expect = 1e-51
 Identities = 91/164 (55%), Positives = 122/164 (74%)
 Frame = +3

Query: 105 LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLXYNNIEGMXXXXXXXXXXXXXXNKLI 284
           + CRFY+ ++P+VE+ V+ NV+ IA+MGAYV L  YN+ EGM              NKLI
Sbjct: 1   MKCRFYENQFPDVEETVVANVKMIADMGAYVRLSEYNDKEGMILLSELSRRRIRSVNKLI 60

Query: 285 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHYET 464
           RVG++E VVVIRVDK+KGYIDLSKRRV  +D+ +C ER+A AK VNSILRHVA  + Y T
Sbjct: 61  RVGRSESVVVIRVDKDKGYIDLSKRRVYQKDLKQCDERFANAKMVNSILRHVAEQVGYTT 120

Query: 465 SEQLEELYKKTAWYFEXKYXKKASAYDFFKQAAVDPSVLDECGL 596
            E+LE+LY+KTAW+F+ K  +KA++YD FK+A  +P++LDEC +
Sbjct: 121 DEELEDLYQKTAWHFDRKEKRKAASYDAFKKAITEPTILDECDI 164


>Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical
           protein F53A2.8b protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 306 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHYETSEQLEEL 485
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V  LL +E  E +E++
Sbjct: 175 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 229

Query: 486 --YKKTAWYFE 512
             +++  W  E
Sbjct: 230 RGWRRLDWNSE 240


>Z81546-8|CAB04456.1|  676|Caenorhabditis elegans Hypothetical
           protein F53A2.8a protein.
          Length = 676

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 306 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHYETSEQLEEL 485
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V  LL +E  E +E++
Sbjct: 69  MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 123

Query: 486 --YKKTAWYFE 512
             +++  W  E
Sbjct: 124 RGWRRLDWNSE 134


>AY313179-1|AAP79304.1|  782|Caenorhabditis elegans
           myotubularin-related protein MTM-6B protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 306 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHYETSEQLEEL 485
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V  LL +E  E +E++
Sbjct: 175 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 229

Query: 486 --YKKTAWYFE 512
             +++  W  E
Sbjct: 230 RGWRRLDWNSE 240


>AY313177-1|AAP79302.1|  676|Caenorhabditis elegans
           myotubularin-related protein MTM-6A protein.
          Length = 676

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 306 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAXLLHYETSEQLEEL 485
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V  LL +E  E +E++
Sbjct: 69  MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 123

Query: 486 --YKKTAWYFE 512
             +++  W  E
Sbjct: 124 RGWRRLDWNSE 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,374,829
Number of Sequences: 27780
Number of extensions: 226014
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)