Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_H03
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC... 35 0.041
At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C... 32 0.38
At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C... 32 0.38
At5g06160.1 68418.m00687 splicing factor-related contains some s... 29 2.0
At2g36070.1 68415.m04429 mitochondrial import inner membrane tra... 29 2.0
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 29 2.7
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 29 3.5
At5g20440.1 68418.m02430 mob1/phocein family protein contains Pf... 29 3.5
At2g41640.1 68415.m05145 expressed protein contains Pfam domain,... 29 3.5
At4g27595.1 68417.m03964 protein transport protein-related low s... 28 4.7
At3g15670.1 68416.m01986 late embryogenesis abundant protein, pu... 28 4.7
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr... 28 4.7
At3g58840.1 68416.m06558 expressed protein 27 8.2
At3g50370.1 68416.m05508 expressed protein 27 8.2
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 27 8.2
At2g06750.1 68415.m00753 hypothetical protein similar to At5g282... 27 8.2
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 27 8.2
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont... 27 8.2
>At2g36640.1 68415.m04494 late embryogenesis abundant protein
(ECP63) / LEA protein nearly identical to to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 448
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +3
Query: 327 DANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKV 506
+A GKA E + +++N+E+ E R+ ++ L+E+ A Q Q++ +
Sbjct: 284 EAKGKAVETKDTAKENMEKAGEVTRQKMEEMRLEGKELKEEAGAKAQEASQKTRESTESG 343
Query: 507 SSNVXETNEKLA 542
+ ET + A
Sbjct: 344 AQKAEETKDSAA 355
>At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +3
Query: 339 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKVSSNV 518
KA + + +IE EELR HPD + N L+ K+ V+ +Q S +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSIGDAYLKRA 245
Query: 519 XETNEKLAPK 548
E L PK
Sbjct: 246 EFNQEPLLPK 255
>At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +3
Query: 339 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKVSSNV 518
KA + + +IE EELR HPD + N L+ K+ V+ +Q S +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSIGDAYLKRA 245
Query: 519 XETNEKLAPK 548
E L PK
Sbjct: 246 EFNQEPLLPK 255
>At5g06160.1 68418.m00687 splicing factor-related contains some
similarity to splicing factor SP:Q12874 from [Homo
sapiens]
Length = 504
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 35 ISSALSLSTAHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGSSIRL*QQQFNS 214
+SS L T + +V RL + + + + RL+QGHR H SI L ++
Sbjct: 1 MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60
Query: 215 LTKSKDAQDFSKAWKD 262
+ KD AW D
Sbjct: 61 TYEDKDG-----AWDD 71
>At2g36070.1 68415.m04429 mitochondrial import inner membrane
translocase subunit TIM44, putative contains similarity
to Swiss-Prot:O35857 import inner membrane translocase
subunit TIM44, mitochondrial precursor [Mus musculus];
contains Pfam domian PF04280: Mitochondrial import inner
membrane, translocase subunit TIM44
Length = 469
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 309 SRAALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESH 488
S+ G+A+ + +++ + + AEEL+ D++ EKL Q E+
Sbjct: 52 SKKIRGEADSNPE--FQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAE 109
Query: 489 KLAXKVSSNVXE 524
+A KVSS+V +
Sbjct: 110 SVAKKVSSSVKD 121
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 348 EALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQ--ES-HKLAXKVSSNV 518
EAL+ S Q + AE LRKA + E + L +L+ A + Q ES +L K+S++
Sbjct: 997 EALKASLQAERQAAENLRKAFSEAEARNSELATELENATRKADQLHESVQRLEEKLSNSE 1056
Query: 519 XE 524
E
Sbjct: 1057 SE 1058
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding protein,
C-terminal domain
Length = 1060
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = +3
Query: 369 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKVSSNVXETNEKLAPK 548
+++E+ +E RKAH + A AL +LQAA + +LA + + ET L K
Sbjct: 876 KSLEKLLDEERKAHIAANRRAEALSLELQAAQAHVDNLQQELA---QARLKET--ALDNK 930
Query: 549 IXAAYDXFAKNTXAGDQED 605
I AA K + D D
Sbjct: 931 IRAASSSHGKRSRFEDVVD 949
>At5g20440.1 68418.m02430 mob1/phocein family protein contains Pfam
profile: PF03637 mob1/phocein family
Length = 217
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +3
Query: 363 SRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKVSSN 515
S N+ RT ++ HP+ + + +RE + + ++E+ +L V N
Sbjct: 9 SSNNVVRTVPSKKRKHPEYKSKGSQIRELISGIRSDNLREAVRLPQGVDIN 59
>At2g41640.1 68415.m05145 expressed protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 500
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 104 RSGPRSDGATRRSRLLQGHRTPHQGSSIRL*QQQFNSLTKSKDAQDFSKAWKDGSESVLQ 283
R+G RSD + + RT SSI L N+ TK + + +++ W+ +Q
Sbjct: 103 RTGLRSDICVMKGDV----RTNSASSSIFLFTSSTNNNTKPEKIKPYTRKWETSVMDTVQ 158
Query: 284 QLNAFAK 304
+LN K
Sbjct: 159 ELNLITK 165
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 327 DANGKAKEAL---EQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLA 497
D K KE+L E QNI + AEELR D K E+L AA ++ V++ KL
Sbjct: 647 DQLSKVKESLVDKETKLQNIIQEAEELRVKEIDYLKKI----EELSAAKESLVEKETKLL 702
Query: 498 XKV 506
V
Sbjct: 703 STV 705
>At3g15670.1 68416.m01986 late embryogenesis abundant protein,
putative / LEA protein, putative similar to SP|P13934
Late embryogenesis abundant protein 76 (LEA 76)
{Brassica napus}; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 225
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Frame = +3
Query: 324 GDANGKAKEALEQSRQNIERTAEELR-KAHPDVEKNATALREKLQAAVQNTVQESHKLAX 500
G+ GKA+E Q+ + AEE R K + E Q+A T Q +
Sbjct: 11 GETRGKAQEKTGQAMGTMRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDKTSQTAQAAQQ 70
Query: 501 KVSSNVXETNEKLAPKIXAAYDXFAKNTXAGDQE 602
K EK + A + T A ++
Sbjct: 71 KAHETAQSAKEKTSQTAQTAQQKAHETTQAAKEK 104
>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
domains; weak similarity to HPSR2 - heavy chain
potential motor protein (GI:871048) [Giardia
intestinalis]
Length = 702
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 309 SRAALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREK 449
++AAL + + +AL + ER AEE R AH + K A RE+
Sbjct: 368 NQAALNEGKLSSLQALREELATTERRAEEERSAH-NATKMAAMERER 413
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 339 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHK 491
KA + + + E+ AE LRK +VEK L K+ ++E K
Sbjct: 128 KALAEIVEKLEGCEKEAEGLRKDRAEVEKRVRDLERKIGVLEVREMEEKSK 178
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 357 EQSRQNIERTAEELRKAHPDVEKNATALRE--KLQAAVQNTVQESHKLAXK 503
EQ R R AEELRK+ + EK+ + E + QAA Q ++ K++ +
Sbjct: 531 EQERLEATRRAEELRKSKEE-EKHRLFMEEERRKQAAKQKLLELEEKISRR 580
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 351 ALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKVSSNVXETN 530
ALE ++ E + D+ K T+ EKLQ+ + + +E++++ S E
Sbjct: 476 ALEAEKEQTANELEASKTTIEDLTKQLTSEGEKLQSQISSHTEENNQVNAMFQSTKEELQ 535
Query: 531 EKLA 542
+A
Sbjct: 536 SVIA 539
>At2g06750.1 68415.m00753 hypothetical protein similar to At5g28270,
At2g12100, At2g05450, At1g45090, At2g16180
Length = 435
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 315 PWRLLAKALSCCSTDSEPSFQALLKSCASF 226
PW+ LA AL + SF L CASF
Sbjct: 133 PWKKLALALIIIVVEGRTSFLLTLDRCASF 162
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/67 (22%), Positives = 35/67 (52%)
Frame = +3
Query: 342 AKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKVSSNVX 521
AKE +E+ R +E + + + + N TAL++ +++A +N E+ K + + +
Sbjct: 970 AKEEIEKLRGEVESSKSHMLQYKSIAQVNETALKQ-MESAHENFRLEAEKRQRSLEAELV 1028
Query: 522 ETNEKLA 542
E+++
Sbjct: 1029 SLRERVS 1035
>At1g72100.1 68414.m08334 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to embryogenic gene [Betula
pendula] GI:4539485; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 480
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 339 KAKEALEQSRQNIERTAEEL-RKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKVSSN 515
KA +A E+ R+ E + +KAH E+ +REK Q + +S +V +
Sbjct: 233 KAHDAKEKVREKAHDVKETVAQKAHESKERAKDRVREKAQELKETATHKSKNAWERVKNG 292
Query: 516 VXE 524
E
Sbjct: 293 ARE 295
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,508,210
Number of Sequences: 28952
Number of extensions: 176194
Number of successful extensions: 863
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -