Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_H02
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05) 60 1e-09
SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23) 30 1.7
SB_23563| Best HMM Match : rve (HMM E-Value=3.3e-25) 30 1.7
SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 5.2
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_95| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
Length = 98
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +2
Query: 293 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAA 391
VN IPGIEEVNMIKEDGTVIHFNNPKA+ A
Sbjct: 54 VNPIPGIEEVNMIKEDGTVIHFNNPKAEMGSGA 86
>SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +2
Query: 530 EEDDEVPNLVGNFDEASKQEAXE 598
+EDDEVP LV NFDE SK E E
Sbjct: 10 DEDDEVPELVENFDEPSKTEGVE 32
>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
Length = 1268
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 458 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAXE 598
+ LGP R+K I ++ PK +E D+ P G+++E +K+E +
Sbjct: 996 TSLGPVK-ERMKNIFATYGTPKRVESDNGPPFNPGDYEEFAKEEGFD 1041
>SB_23563| Best HMM Match : rve (HMM E-Value=3.3e-25)
Length = 640
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 458 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAXE 598
+ LGP R+K I ++ PK +E D+ P G+++E +K+E +
Sbjct: 333 TSLGPVK-ERMKNIFATYGTPKRVESDNGPPFNSGDYEEFAKEEGFD 378
>SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1015
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 458 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAXE 598
+ LGP R+K I ++ PK +E D+ P G+++E +K+E +
Sbjct: 858 TSLGPVK-ERMKNIFATYGTPKRVESDNGPPFNSGDYEEFAKEEGFD 903
>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1787
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 458 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAXE 598
+ LGP R+K I ++ PK +E D+ P G+++E +K+E +
Sbjct: 1154 TSLGPVK-ERIKNIFATYGTPKRVESDNGPPFNSGDYEEFAKEEGFD 1199
>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2306
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 458 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAXE 598
+ LGP R+K I ++ PK +E D+ P G ++E +K+E +
Sbjct: 1053 TSLGPVK-ERMKNIFATYGTPKRVESDNGPPFHSGAYEEFAKEEGFD 1098
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 221 CVSVCP-YRRCVLATGVSLIFRCSFCC 144
C S+C Y RCV+ V++ CS C
Sbjct: 639 CTSICHRYGRCVMLANVTMFCNCSRAC 665
>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -2
Query: 266 VFCHLWPQ*-REQPSSCVSVCPY 201
VF +WP+ RE P+SC+S P+
Sbjct: 734 VFAFIWPRFYREAPASCISELPW 756
>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 365 PKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 472
P L ANT ITG G++ + ++ P I+ LGP
Sbjct: 248 PMRYPDLCANTLFITGKGQHHRQIKLQP-IVRALGP 282
>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +2
Query: 206 GTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKED-GTVIHFNNPKAQAS 382
G ++ K V T TDD T PG + + +IKE NN K +
Sbjct: 157 GMKEKESKCVETTDTTDDGTKTMNDLSENSETTPG-QTITIIKEHMPNTPQENNSKVDTT 215
Query: 383 LAANTFAITGHGENKQ 430
+ + I GEN Q
Sbjct: 216 IGQSK-EIVVEGENTQ 230
>SB_95| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +2
Query: 368 KAQASLAANTFA-ITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPK 523
K + A N F H +NK + L +L Q+G D R + SV K
Sbjct: 117 KGNVAAARNCFVGALSHSKNKASLRNLSMVLRQIGSDSKERADNVRLSVEKAK 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,336,334
Number of Sequences: 59808
Number of extensions: 375782
Number of successful extensions: 983
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -