Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_H02
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...   188   4e-48
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    31   0.86 
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   3.5  
U23527-2|AAP40525.1|  300|Caenorhabditis elegans Neuronal igcam ...    27   8.0  
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ...    27   8.0  
L23645-8|AAK26133.1|  282|Caenorhabditis elegans Peroxisome asse...    27   8.0  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score =  188 bits (457), Expect = 4e-48
 Identities = 93/154 (60%), Positives = 114/154 (74%), Gaps = 5/154 (3%)
 Frame = +2

Query: 143 NSRMNSEKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGI 313
           +S+  +E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DD           V  IPGI
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLKKLSVTNIPGI 61

Query: 314 EEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLK 493
           EEVNMIK+DGTVIHFNNPK Q S+ ANTF++TG  +NKQ TEMLPGIL+QLGP+ L  LK
Sbjct: 62  EEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLK 121

Query: 494 RIASSVA--APKPLEEDDEVPNLVGNFDEASKQE 589
           ++A++V    P    ED++VP LVG+FD ASK E
Sbjct: 122 KLANNVTKLGPDGKGEDEDVPELVGDFDAASKNE 155


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 458 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFD 571
           S+ G  G +RL   A+  A P  ++   ++PNL  NFD
Sbjct: 203 SEAGSTGKDRLLVTAAVAAGPATIDAGYDIPNLAPNFD 240


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 268 AVIAQKVVSEHNSWHRRGKYDQRGR 342
           ++I+  V + H++WH  G  D RGR
Sbjct: 34  SIISGDVNAHHSAWHSEGSEDTRGR 58


>U23527-2|AAP40525.1|  300|Caenorhabditis elegans Neuronal igcam
           protein 1, isoform b protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 536 DDEVPNLVGNFDEASKQEAXEVVTN 610
           D+ VPNL GN D+    EA   V N
Sbjct: 118 DENVPNLYGNLDDIIDMEATAEVPN 142


>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
            protein 1, isoform a protein.
          Length = 1147

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 536  DDEVPNLVGNFDEASKQEAXEVVTN 610
            D+ VPNL GN D+    EA   V N
Sbjct: 965  DENVPNLYGNLDDIIDMEATAEVPN 989


>L23645-8|AAK26133.1|  282|Caenorhabditis elegans Peroxisome
           assembly factor protein19 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 503 SSVAAPKPLEEDDEVPNLVGNFDEASKQEA 592
           ++  APKP   DDE+  L+ + D+ + Q+A
Sbjct: 29  TATPAPKPRTTDDELDELMASADQEAAQKA 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,255,184
Number of Sequences: 27780
Number of extensions: 274621
Number of successful extensions: 792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)