Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_H02
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ... 135 2e-32
At1g73230.1 68414.m08475 nascent polypeptide-associated complex ... 130 5e-31
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 36 0.021
At5g47690.1 68418.m05887 expressed protein 32 0.34
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-... 28 5.6
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 28 5.6
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 28 5.6
At4g22780.1 68417.m03288 ACT domain-containing protein (ACR7) lo... 27 7.4
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 27 9.8
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put... 27 9.8
>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
(NAC) domain-containing protein / BTF3b-like
transcription factor, putative similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain; identical to cDNA
BTF3b-like factor GI:5912423
Length = 165
Score = 135 bits (326), Expect = 2e-32
Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 12/159 (7%)
Frame = +2
Query: 152 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 331
MN EKL K+ + VR GGKGT RRKKK VH T TDD VN+IP IEEVN+
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60
Query: 332 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA--- 502
K+D VI F NPK QAS+AANT+ ++G + K+ ++LP I+SQLGPD ++ LK++A
Sbjct: 61 KDD-VVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQF 119
Query: 503 --------SSVAAPKPLEEDDEVPNLVG-NFDEASKQEA 592
++ +A E+DD+VP LVG F+ A++++A
Sbjct: 120 QKQASGEGNAASATIQEEDDDDVPELVGETFETAAEEKA 158
>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain
Length = 165
Score = 130 bits (315), Expect = 5e-31
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 13/166 (7%)
Frame = +2
Query: 152 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 331
MN EKL K+ + VR GGKGT RRKKK VH T TDD VN+IP IEEVN+
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60
Query: 332 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSV 511
K+D VI F NPK QAS+AANT+ ++G + K+ ++LP I+SQLGPD L+ LK++A
Sbjct: 61 KDD-VVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQF 119
Query: 512 AAPKP-----------LEEDDEVPNLV--GNFDEASKQEAXEVVTN 610
P ++DD+VP+LV F+ + +EA + +
Sbjct: 120 QKQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATEEAPKAAAS 165
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 35.9 bits (79), Expect = 0.021
Identities = 33/104 (31%), Positives = 49/104 (47%)
Frame = +2
Query: 293 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 472
V T P E + + DG ++ N S + F +G G ++E+ P LG
Sbjct: 51 VETKPVTEHKSFTRRDGLLLLSRNGYFNRSF--HGFHSSGFGYG--SSEVGPS----LGM 102
Query: 473 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAXEVV 604
++ R A++VAA KP EED +V L N EAS +E + V
Sbjct: 103 RYMSLSIRNATTVAAKKPEEEDKKVDELAKNRKEASPEECDQAV 146
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -3
Query: 490 QSVQAVGSELAEDTREHLCGLLILPVSGNRERVR-GQRRLCLRVVK 356
Q++ V E +ED +EHL +L+ + NR VR RRL ++V++
Sbjct: 172 QNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIE 217
>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
/ HD-ZIP transcription factor 13 identical to homeobox
gene 13 protein (GP:12325190) [Arabidopsis thaliana]
Length = 294
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 125 TQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 232
+Q K R+N E++K L+ +G K P RK ++
Sbjct: 80 SQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQL 115
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +3
Query: 216 DARRRLFTLLRPQMTKNCS--HRSKSC 290
+++RRL T+L+P+M K C H S +C
Sbjct: 948 ESQRRLHTVLKPKMAKLCQVLHLSDAC 974
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +3
Query: 216 DARRRLFTLLRPQMTKNCS--HRSKSC 290
+++RRL T+L+P+M K C H S +C
Sbjct: 948 ESQRRLHTVLKPKMAKLCQVLHLSDAC 974
>At4g22780.1 68417.m03288 ACT domain-containing protein (ACR7) low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 449
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +2
Query: 212 PRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGI--EEVNMIKEDGTVIHFNNPKAQASL 385
P R++ + + AA + PG+ E +++E+G I + S+
Sbjct: 302 PERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIARAEISTKDSI 361
Query: 386 AANTFAITGHGENKQTTEMLPGILSQLGPDGLN 484
A N F +T N E++ I ++G D L+
Sbjct: 362 ARNVFYVTDANGNLIDPEIIKSIREKIGIDDLS 394
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 458 SQLGPDGLNRLKRIASSVAAPKPLEED-----DEVPNLVGNFDEASKQEAXEVVTN 610
++LG DG N+ K+ S K +++D D+ N GN D +K E TN
Sbjct: 180 NELGEDGENQ-KQFESDNGEKKSIDDDKKSSDDDKENKTGNEDTETKTEKENTETN 234
>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to phosphoglycerate
dehydrogenase, Arabidopsis thaliana, SP:O04130
Length = 603
Score = 27.1 bits (57), Expect = 9.8
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2
Query: 104 SAPLLTLTQFT-LKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA-ATDDXXXXXX 277
+AP+++ T LK + +EKL +L Q+ GG G + K+ + +A ATDD
Sbjct: 373 NAPMVSAEVLTELKPYVVLAEKLGRLAVQLVAGGSGV--KNAKITYASARATDDLDTRLL 430
Query: 278 XXXXXVNTIPGIEE--VNMIKEDGT 346
I I + VN++ D T
Sbjct: 431 RAMITKGIIEPISDVYVNLVNADFT 455
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,309,741
Number of Sequences: 28952
Number of extensions: 242592
Number of successful extensions: 690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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