Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G23
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.29 
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    27   2.1  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   2.7  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    26   3.6  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    26   3.6  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   6.3  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    25   8.4  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   8.4  

>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = +3

Query: 312 KAKEALEQSRQNIERTAEELRKAHPDVXKNATALREKLQAAVQNTVQESQKLXKXVSSNV 491
           KA + LE+  ++ E + EE+   H    +  T+ +   +   +  +QE  ++ K +    
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMIDEYR 412

Query: 492 QETNE 506
           Q+ +E
Sbjct: 413 QKLSE 417


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 294 LGDANGKAKEALEQSRQNIERTAEELRKAHPD---VXKNATALREKLQAAVQNTVQESQK 464
           + +A  KA+++LEQ+    +   E L K H +     +   + +EKL A ++   + S++
Sbjct: 52  INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111

Query: 465 L 467
           L
Sbjct: 112 L 112


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 282 SXAALGDANGKAKEALEQSRQNIERTAEE 368
           S A  G  NG+AKE  E+ R   ++T E+
Sbjct: 468 SSAKQGKGNGRAKETPEEKRARKKKTKED 496


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 318 KEALEQSRQNIERTAEELRKAHPD--VXKNATALREKLQAAVQNTVQESQKLXKXVSSNV 491
           ++ L + R NI   ++ + K+  D  +  N   L+    A+  + V+E          ++
Sbjct: 53  QKRLAKLRANIHLESQVIGKSRIDRMLATNVEKLQTVSHASTLHDVEEFYTSHSAKPLDI 112

Query: 492 QETNEKLAPKIKAAY 536
            E NE+L+  +++AY
Sbjct: 113 SEINERLSEAVQSAY 127


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/69 (23%), Positives = 36/69 (52%)
 Frame = +3

Query: 312 KAKEALEQSRQNIERTAEELRKAHPDVXKNATALREKLQAAVQNTVQESQKLXKXVSSNV 491
           K+++ LE S Q +E    E +   P+V +     +EK ++ V+   +E +     +S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKEEK-----ISRNL 185

Query: 492 QETNEKLAP 518
           + ++  ++P
Sbjct: 186 RSSSRSISP 194


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 477 VSSNVQET--NEKLAPKIKAAYD 539
           V  N++ET   EK A K+KA+YD
Sbjct: 300 VDLNIEETVLKEKYADKVKASYD 322


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 411 LREKLQAAVQNTVQESQKLXKXVSSNVQETNEKLAPKIKAAYDDFAK 551
           +REK+Q+  +   + S KL    +  V++ +++   K    Y DFAK
Sbjct: 129 IREKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTDKNY-DFAK 174


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 300 DANGKAKEALEQSRQNIERTAEE 368
           D+  KAK  LEQ+R  +ERT  E
Sbjct: 403 DSIKKAKTELEQARIELERTQRE 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,269
Number of Sequences: 5004
Number of extensions: 24480
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)