Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G23
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902...    31   0.53 
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    29   2.1  
04_01_0180 + 2034021-2034023,2034741-2035088                           29   2.1  
02_04_0315 - 21969416-21970756                                         29   2.1  
01_01_0473 - 3478660-3480338,3480507-3480609                           29   3.7  
03_05_0696 - 26856413-26856416,26857917-26858524,26859041-268591...    28   4.9  
11_04_0218 + 14983132-14984658,14984762-14984869,14984964-149851...    28   6.5  
03_05_0373 + 23581812-23583293                                         28   6.5  
02_03_0102 - 15238808-15239437,15241609-15243264                       28   6.5  
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491...    27   8.6  

>02_02_0331 +
           9017291-9019084,9019205-9019402,9020014-9020184,
           9020292-9020435,9020552-9020764,9020859-9021929,
           9022365-9022391
          Length = 1205

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 318 KEALEQSRQNIERTAEELR-KAHPDVXKNATALREKLQAAVQNTVQESQKLXKXVSSNVQ 494
           K+  +QS    ERT  E + KAH ++ K      E +QAA    +QE Q         VQ
Sbjct: 416 KQDAKQSDPKKERTVSEAKEKAHDEMNKGRAYGNETVQAASVKQMQEEQFPMSLADQKVQ 475

Query: 495 ET 500
            T
Sbjct: 476 AT 477


>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
            31227790-31228014,31228097-31228255,31228393-31228551,
            31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +3

Query: 297  GDANGKAKEALEQSRQNIERTAEELRKAHPDVXKNATALREKLQ--AAVQNTVQESQKLX 470
            GD + K +  L +++ + E     L+  +    ++ TA    LQ  A ++  VQE     
Sbjct: 754  GDDHSKTRSLLSEAQLHKEELELNLKSLNDLHVESKTAAESALQRIAELETQVQELSAAE 813

Query: 471  KXVSSNVQETNEKLAPKIKAAYD 539
            + + S++ E   KLA   K + D
Sbjct: 814  QSLKSHLTEFESKLASAEKKSMD 836


>04_01_0180 + 2034021-2034023,2034741-2035088
          Length = 116

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 321 EALEQSRQNIERTAEELRKAHPDVXKNATALREK---LQAAVQN 443
           EALE+  QN+ R  EE +K H ++ K    L  K   L AA +N
Sbjct: 52  EALERQVQNLTRYKEEKQKQHANLQKEFAELERKYRDLDAAHRN 95


>02_04_0315 - 21969416-21970756
          Length = 446

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 300 DANGKAKEALEQSRQNIERTAEELRKAHPDVXKNATALREKLQAAVQNTVQESQKL---X 470
           D NG  + ALE++ + +    E L  A  +  K   A+ EK ++A++   QE++ L    
Sbjct: 246 DENGSLRRALERAVEEVNAANESLELATGENSKLQDAVAEK-ESAMEALRQENESLKASE 304

Query: 471 KXVSSNVQETNEKLAPKIKAA 533
                  +E + +LA   KAA
Sbjct: 305 AEARGRAKELDGQLAAARKAA 325


>01_01_0473 - 3478660-3480338,3480507-3480609
          Length = 593

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +3

Query: 300 DANGKAKEALEQSRQNIERTAEELRKAHPDVXKNATALREKLQAAVQNTVQES-QKLXKX 476
           D + K  +    S    +   +ELR+ + D   +  AL E++ A +++ +QE+ +KL   
Sbjct: 154 DISKKGSDGSSSSSSESDSEVDELREDNGD--GSPFALNERI-AELEDELQEAREKLEAL 210

Query: 477 VSSNVQETNEKLAPKIKAAYDDFAKNTQE 563
              N +   EKL  K+K ++ + +   +E
Sbjct: 211 EEKNTRCQCEKLEEKLKDSHSEISSLQKE 239


>03_05_0696 -
           26856413-26856416,26857917-26858524,26859041-26859101,
           26859181-26859557,26860314-26861156
          Length = 630

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +3

Query: 312 KAKEALEQSRQNIERTAEELRKAHPDVXKNATALREKLQAAV---QNTVQESQKLXKXVS 482
           +A +A+  S+    + A+EL      V K+     +K QA      N   E     + VS
Sbjct: 189 EASQAIRNSKYL--KAAQELLDEVVSVWKSIKQKAQKDQAEAGKSDNKEAEGGSKGEGVS 246

Query: 483 SNVQETNEKLAPKIKAA 533
           SN QE+    AP+I AA
Sbjct: 247 SNPQESTANAAPEISAA 263


>11_04_0218 +
           14983132-14984658,14984762-14984869,14984964-14985125,
           14985270-14985275
          Length = 600

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 51  QVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGSSIRL*NNSLTRSPSQRTHRTSARLG 230
           +  ++LRLHR+G R +  +R   L   H+   + S + L   +L+   +   HR + R G
Sbjct: 13  EAEAALRLHRNGRRDEALSRAMDLAIQHK---RSSPLAL---NLSGDLNMAAHRRNRRRG 66

Query: 231 RTA 239
           R A
Sbjct: 67  RGA 69


>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 354 ARCSASTVPKPPW 316
           +RCSAST PK PW
Sbjct: 66  SRCSASTPPKSPW 78


>02_03_0102 - 15238808-15239437,15241609-15243264
          Length = 761

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +3

Query: 312 KAKEALEQSRQNIERTAEELRKAHPDVXK------NATALREKLQAAVQNTVQESQKLXK 473
           K  E +  +  N++ ++E + K   ++ +      +A A REK+++ +    + S    K
Sbjct: 520 KTGEEIATALNNMDVSSEYVLKLRHEIEELCSEAFHAPADREKIKSCLSELGEISASFKK 579

Query: 474 XVSSNVQETNEKLAPKIKAAYDDFAKNTQEGDQ*RFRE 587
            + S ++     +AP+++   D  A  + E D   + E
Sbjct: 580 ILHSGLEHLVASVAPRVRPVLDTVATVSYELDDAEYGE 617


>12_02_1167 +
           26647293-26648356,26648493-26648577,26649129-26649191,
           26649381-26649443,26649987-26650070,26650229-26650783
          Length = 637

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/86 (24%), Positives = 38/86 (44%)
 Frame = +3

Query: 312 KAKEALEQSRQNIERTAEELRKAHPDVXKNATALREKLQAAVQNTVQESQKLXKXVSSNV 491
           KA   LE+   ++E   E    A+ ++ +    L+EK  + V+N  +   +L   +S++ 
Sbjct: 391 KANGNLEKQLLSLEEKYENATHANGELKEELLFLKEKFVSVVENNTRLEHQL-TALSTSF 449

Query: 492 QETNEKLAPKIKAAYDDFAKNTQEGD 569
               E+L    K   D + K   E D
Sbjct: 450 LSLKEELLWLEKEEADLYVKEPWEDD 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,942,913
Number of Sequences: 37544
Number of extensions: 200630
Number of successful extensions: 884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)