Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_G21
(560 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B503E Cluster: PREDICTED: similar to splicing f... 187 2e-46
UniRef50_UPI0000EBDD2E Cluster: PREDICTED: similar to splicing f... 136 2e-31
UniRef50_P26368 Cluster: Splicing factor U2AF 65 kDa subunit (U2... 136 2e-31
UniRef50_P90978 Cluster: Splicing factor U2AF 65 kDa subunit; n=... 124 1e-27
UniRef50_UPI000065F936 Cluster: Splicing factor U2AF 65 kDa subu... 112 5e-24
UniRef50_UPI0000F2E898 Cluster: PREDICTED: similar to U2 (RNU2) ... 105 5e-22
UniRef50_Q8T8Y4 Cluster: AT16577p; n=3; Sophophora|Rep: AT16577p... 101 2e-20
UniRef50_Q4SAX3 Cluster: Chromosome 3 SCAF14679, whole genome sh... 100 2e-20
UniRef50_Q4TF95 Cluster: Chromosome undetermined SCAF4753, whole... 73 3e-12
UniRef50_Q5C2P7 Cluster: SJCHGC09464 protein; n=1; Schistosoma j... 64 2e-09
UniRef50_Q0UUV3 Cluster: Putative uncharacterized protein; n=1; ... 54 3e-06
UniRef50_Q54LV5 Cluster: RNA-binding region-containing protein; ... 46 5e-04
UniRef50_A2QMQ0 Cluster: Contig An07c0080, complete genome; n=11... 44 0.003
UniRef50_Q5KFM4 Cluster: RRNA primary transcript binding protein... 42 0.007
UniRef50_Q4P3F0 Cluster: Putative uncharacterized protein; n=3; ... 42 0.013
UniRef50_Q5CXC0 Cluster: Splicing factor U2AF U2 snRNP auxiliary... 40 0.053
UniRef50_A7NXF8 Cluster: Chromosome chr5 scaffold_2, whole genom... 35 0.21
UniRef50_A2AEK1 Cluster: Cleavage stimulation factor, 3' pre-RNA... 36 0.65
UniRef50_A1CA44 Cluster: RNP domain protein; n=13; Pezizomycotin... 36 0.65
UniRef50_Q0LJY9 Cluster: Response regulator receiver; n=1; Herpe... 35 1.1
UniRef50_Q2U8W5 Cluster: Predicted protein; n=1; Aspergillus ory... 35 1.5
UniRef50_A7S854 Cluster: Predicted protein; n=4; Nematostella ve... 34 2.0
UniRef50_Q6C1Y4 Cluster: Similarities with sp|P34761 Saccharomyc... 34 2.0
UniRef50_A2Q4R3 Cluster: RNA-binding region RNP-1; n=2; core eud... 34 2.6
UniRef50_A4RFH0 Cluster: Putative uncharacterized protein; n=4; ... 34 2.6
UniRef50_A7PJ01 Cluster: Chromosome chr13 scaffold_17, whole gen... 33 3.4
UniRef50_Q7RQR4 Cluster: KED; n=3; Plasmodium (Vinckeia)|Rep: KE... 33 3.4
UniRef50_Q5CSE3 Cluster: Splicing factor U2AF like SnRNP auxilar... 33 3.4
UniRef50_A0EAC5 Cluster: Chromosome undetermined scaffold_86, wh... 33 3.4
UniRef50_UPI00006CBD24 Cluster: hypothetical protein TTHERM_0015... 33 4.6
UniRef50_A5GEF6 Cluster: RNP-1 like RNA-binding protein; n=1; Ge... 33 4.6
UniRef50_A5K369 Cluster: U2 snRNP auxiliary factor, putative; n=... 33 4.6
UniRef50_Q2JJY2 Cluster: Putative uncharacterized protein; n=2; ... 33 6.0
UniRef50_Q70JP5 Cluster: Putative DIP2 protein; n=5; BEP clade|R... 33 6.0
UniRef50_Q3EBP3 Cluster: Uncharacterized protein At2g33435.1; n=... 33 6.0
UniRef50_O22794 Cluster: Putative splicing factor U2AF large cha... 33 6.0
UniRef50_Q57W18 Cluster: RNA-binding protein, putative; n=1; Try... 33 6.0
UniRef50_UPI0000E47894 Cluster: PREDICTED: similar to scavenger ... 32 8.0
UniRef50_Q7ZUX2 Cluster: Cstf2 protein; n=2; Danio rerio|Rep: Cs... 32 8.0
UniRef50_Q8IBU0 Cluster: Putative uncharacterized protein PF07_0... 32 8.0
UniRef50_Q552N9 Cluster: RNA-binding region-containing protein; ... 32 8.0
UniRef50_Q4N3F2 Cluster: U2 small nuclear ribonucleoprotein, aux... 32 8.0
UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r... 32 8.0
UniRef50_A7AU39 Cluster: RNA recognition motif (RRM)-containing ... 32 8.0
UniRef50_A4VDP3 Cluster: Putative uncharacterized protein; n=1; ... 32 8.0
UniRef50_Q6C4U4 Cluster: Similarities with tr|O13845 Schizosacch... 32 8.0
UniRef50_Q00880 Cluster: Cutinase negative acting protein; n=2; ... 32 8.0
UniRef50_A6SSI6 Cluster: Putative uncharacterized protein; n=2; ... 32 8.0
>UniRef50_UPI00015B503E Cluster: PREDICTED: similar to splicing
factor u2af large subunit; n=2; Apocrita|Rep: PREDICTED:
similar to splicing factor u2af large subunit - Nasonia
vitripennis
Length = 547
Score = 187 bits (455), Expect = 2e-46
Identities = 87/89 (97%), Positives = 87/89 (97%)
Frame = +2
Query: 272 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 451
LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP
Sbjct: 185 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 244
Query: 452 FGVTEEETMEFFNQQMHLSGLAXAAGNPV 538
FGVTEEE MEFFNQQMHLSGLA AAGNPV
Sbjct: 245 FGVTEEEMMEFFNQQMHLSGLAQAAGNPV 273
>UniRef50_UPI0000EBDD2E Cluster: PREDICTED: similar to splicing
factor U2AF homolog - mouse; n=2; Bos taurus|Rep:
PREDICTED: similar to splicing factor U2AF homolog -
mouse - Bos taurus
Length = 330
Score = 136 bits (330), Expect = 2e-31
Identities = 66/99 (66%), Positives = 72/99 (72%), Gaps = 8/99 (8%)
Frame = +2
Query: 275 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 430
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 431 LYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPVFGL 547
LYVGNIPFG+TEE M+FFN QM L GL A GNPV +
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV 189
>UniRef50_P26368 Cluster: Splicing factor U2AF 65 kDa subunit (U2
auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)); n=44; Eumetazoa|Rep:
Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor
65 kDa subunit) (U2 snRNP auxiliary factor large
subunit) (hU2AF(65)) - Homo sapiens (Human)
Length = 475
Score = 136 bits (330), Expect = 2e-31
Identities = 66/99 (66%), Positives = 72/99 (72%), Gaps = 8/99 (8%)
Frame = +2
Query: 275 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 430
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 431 LYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPVFGL 547
LYVGNIPFG+TEE M+FFN QM L GL A GNPV +
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV 189
>UniRef50_P90978 Cluster: Splicing factor U2AF 65 kDa subunit; n=7;
Bilateria|Rep: Splicing factor U2AF 65 kDa subunit -
Caenorhabditis elegans
Length = 496
Score = 124 bits (299), Expect = 1e-27
Identities = 57/88 (64%), Positives = 68/88 (77%)
Frame = +2
Query: 275 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 454
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 193
Query: 455 GVTEEETMEFFNQQMHLSGLAXAAGNPV 538
G EE ++FFNQQMHL GLA A GNP+
Sbjct: 194 GCNEEAMLDFFNQQMHLCGLAQAPGNPI 221
>UniRef50_UPI000065F936 Cluster: Splicing factor U2AF 65 kDa subunit
(U2 auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)).; n=1; Takifugu
rubripes|Rep: Splicing factor U2AF 65 kDa subunit (U2
auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)). - Takifugu rubripes
Length = 555
Score = 112 bits (270), Expect = 5e-24
Identities = 66/125 (52%), Positives = 72/125 (57%), Gaps = 34/125 (27%)
Frame = +2
Query: 275 YWDVPPPGFEHITPLQYKAMQ--------------------------AAGQIPANIVADT 376
YWDVPPPGFEHITP+QYKAMQ AAGQIPA + T
Sbjct: 78 YWDVPPPGFEHITPMQYKAMQGTKAGLNTRPSGFSRTRLPFRDARVSAAGQIPATALLPT 137
Query: 377 --------PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGN 532
VPVVGS +TRQARRLYVGNIPFG+TEE M+FFN QM L GL A GN
Sbjct: 138 MTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGN 197
Query: 533 PVFGL 547
PV +
Sbjct: 198 PVLAV 202
>UniRef50_UPI0000F2E898 Cluster: PREDICTED: similar to U2 (RNU2)
small nuclear RNA auxiliary factor 2,; n=1; Monodelphis
domestica|Rep: PREDICTED: similar to U2 (RNU2) small
nuclear RNA auxiliary factor 2, - Monodelphis domestica
Length = 386
Score = 105 bits (253), Expect = 5e-22
Identities = 51/72 (70%), Positives = 55/72 (76%), Gaps = 8/72 (11%)
Frame = +2
Query: 275 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 430
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 431 LYVGNIPFGVTE 466
LYVGNIPFG+TE
Sbjct: 151 LYVGNIPFGITE 162
>UniRef50_Q8T8Y4 Cluster: AT16577p; n=3; Sophophora|Rep: AT16577p -
Drosophila melanogaster (Fruit fly)
Length = 449
Score = 101 bits (241), Expect = 2e-20
Identities = 46/89 (51%), Positives = 60/89 (67%)
Frame = +2
Query: 278 WDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFG 457
WD+PP G+ H+TP Q+KAM A+GQI + I++D S ITRQARRLYVGNIPFG
Sbjct: 62 WDIPPEGYNHLTPQQHKAMLASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFG 121
Query: 458 VTEEETMEFFNQQMHLSGLAXAAGNPVFG 544
VT+EE M+FFN Q+ G + + + G
Sbjct: 122 VTDEEMMQFFNHQIMALGFEAKSSHYMDG 150
>UniRef50_Q4SAX3 Cluster: Chromosome 3 SCAF14679, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 3 SCAF14679, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 600
Score = 100 bits (240), Expect = 2e-20
Identities = 66/130 (50%), Positives = 75/130 (57%), Gaps = 39/130 (30%)
Frame = +2
Query: 275 YWDVPPPGFEHITPLQYKAMQ----------------------AAGQIPANIVADTPQAA 388
YWDVPPPGFEHITPLQYKAMQ AAGQIP + T +A
Sbjct: 89 YWDVPPPGFEHITPLQYKAMQGRAPPRLPGPAPRLPSVSLWPPAAGQIPTMALLATAASA 148
Query: 389 --------VPVVGSTITRQARRLYVGNIPFGVTE--------EETM-EFFNQQMHLSGLA 517
VPV GS +TRQARRLYVGNIPFG+TE +E+M EFFN QM L+GL+
Sbjct: 149 GVVAAPTPVPVAGSQMTRQARRLYVGNIPFGLTEALRRLCSPQESMAEFFNAQMRLAGLS 208
Query: 518 XAAGNPVFGL 547
A NPV +
Sbjct: 209 QAPSNPVLAV 218
>UniRef50_Q4TF95 Cluster: Chromosome undetermined SCAF4753, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4753,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 351
Score = 73.3 bits (172), Expect = 3e-12
Identities = 45/78 (57%), Positives = 48/78 (61%), Gaps = 18/78 (23%)
Frame = +2
Query: 287 PPPGFEHITPLQYKAMQ----------AAGQIPANIVADTPQ--------AAVPVVGSTI 412
PPPGFEHITPLQYKAMQ AAGQIP A + VPV GS +
Sbjct: 76 PPPGFEHITPLQYKAMQGLPSVSLWPPAAGQIPNYGAAGHGRQRGRGGAPTPVPVAGSQM 135
Query: 413 TRQARRLYVGNIPFGVTE 466
TRQARRLYVGN PFG+TE
Sbjct: 136 TRQARRLYVGNNPFGLTE 153
>UniRef50_Q5C2P7 Cluster: SJCHGC09464 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09464 protein - Schistosoma
japonicum (Blood fluke)
Length = 159
Score = 64.5 bits (150), Expect = 2e-09
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +2
Query: 275 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVA 370
YWDVPPPGFEH+TP QYKA+Q +GQ+P N+ A
Sbjct: 127 YWDVPPPGFEHVTPAQYKALQTSGQVPVNVYA 158
>UniRef50_Q0UUV3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 606
Score = 53.6 bits (123), Expect = 3e-06
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 13/97 (13%)
Frame = +2
Query: 278 WDVPPPGFEHITPLQYK---------AMQAAGQIPANIVA----DTPQAAVPVVGSTITR 418
WD+ P G+E+IT Q K A +AA P+ + A A+ + ++
Sbjct: 224 WDIKPAGYENITAEQAKLSGMFPLPGAPRAAPMDPSKLAAFMSPSAGTASAAALAPGASK 283
Query: 419 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAG 529
Q++RLYV N+P G T EE +EFFN Q L+GL +G
Sbjct: 284 QSKRLYVHNLPSGTTSEELLEFFNLQ--LNGLNVVSG 318
>UniRef50_Q54LV5 Cluster: RNA-binding region-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: RNA-binding
region-containing protein - Dictyostelium discoideum AX4
Length = 671
Score = 46.4 bits (105), Expect = 5e-04
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +2
Query: 416 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPV 538
+Q+RR+YVGNIP G+++ E MEFFN + + L G PV
Sbjct: 265 KQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTKPGPPV 305
>UniRef50_A2QMQ0 Cluster: Contig An07c0080, complete genome; n=11;
Pezizomycotina|Rep: Contig An07c0080, complete genome -
Aspergillus niger
Length = 598
Score = 43.6 bits (98), Expect = 0.003
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Frame = +2
Query: 278 WDVPPPGFEHITPLQYK---------AMQAAGQIPANIVADTPQAA-----VPVVGSTIT 415
WD+ PPG+E++T Q K A + P+ + A Q A + + +
Sbjct: 189 WDIKPPGYENVTAEQAKLSGMFPLPGAPRQQPMDPSRLQAFMNQPAGGNADTSTLKPSNS 248
Query: 416 RQARRLYVGNIPFGVTEEETMEFFNQQMH 502
RQA+RL+V NIP VT E + FFN Q++
Sbjct: 249 RQAKRLFVYNIPESVTGETLLAFFNVQLN 277
>UniRef50_Q5KFM4 Cluster: RRNA primary transcript binding protein,
putative; n=2; Filobasidiella neoformans|Rep: RRNA
primary transcript binding protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 651
Score = 42.3 bits (95), Expect = 0.007
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = +2
Query: 278 WDVPPPGFEHITPLQYKAM----QAAGQIP--ANIVADTPQAAVPVVGSTITRQARRLYV 439
WD P F+ I+ L+ K G++P A++ A S RQ RLY+
Sbjct: 220 WDTAPVQFQGISALEAKTTGLFTYGPGRVPPPAHLGIPATFVAGAFPPSNPVRQNNRLYI 279
Query: 440 GNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPV 538
G I + E++ +FFN M G+A +PV
Sbjct: 280 GGIKEDMQEQQIQDFFNNLMKEKGMADGKEDPV 312
>UniRef50_Q4P3F0 Cluster: Putative uncharacterized protein; n=3;
Fungi/Metazoa group|Rep: Putative uncharacterized
protein - Ustilago maydis (Smut fungus)
Length = 727
Score = 41.5 bits (93), Expect = 0.013
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +2
Query: 416 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNP 535
RQARRLYVGNI E+ + FFN+QM L G P
Sbjct: 350 RQARRLYVGNITHQANEQNIVAFFNEQMLKLKLGTEPGEP 389
>UniRef50_Q5CXC0 Cluster: Splicing factor U2AF U2 snRNP auxiliary
factor large subunit; 3 RRM domains; n=3;
Cryptosporidium|Rep: Splicing factor U2AF U2 snRNP
auxiliary factor large subunit; 3 RRM domains -
Cryptosporidium parvum Iowa II
Length = 492
Score = 39.5 bits (88), Expect = 0.053
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 404 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPV 538
S ++ R +YVGN+P G+T E +E+ N+ + + ++ GNPV
Sbjct: 109 SFTSKPLREVYVGNLPQGITVTELLEYINRSIIKNSVSHTNGNPV 153
>UniRef50_A7NXF8 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 902
Score = 35.1 bits (77), Expect(2) = 0.21
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNP 535
TR RRLYV N+P +E+ ME N + SG+ G P
Sbjct: 423 TRPMRRLYVENLPVSSSEKALMECLNNFLLSSGINHVQGTP 463
Score = 21.4 bits (43), Expect(2) = 0.21
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +2
Query: 278 WDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLY 436
WD+PP + + AG + +N + AVPV +T R+Y
Sbjct: 359 WDLPPSRTDGMN---------AGSVLSNELPSAVPVAVPVTATTAKPPLPRIY 402
>UniRef50_A2AEK1 Cluster: Cleavage stimulation factor, 3' pre-RNA
subunit 2; n=6; Bilateria|Rep: Cleavage stimulation
factor, 3' pre-RNA subunit 2 - Mus musculus (Mouse)
Length = 554
Score = 35.9 bits (79), Expect = 0.65
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493
A +PV + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>UniRef50_A1CA44 Cluster: RNP domain protein; n=13;
Pezizomycotina|Rep: RNP domain protein - Aspergillus
clavatus
Length = 378
Score = 35.9 bits (79), Expect = 0.65
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 359 NIVADTPQAAVPVVGSTITR--QARRLYVGNIPFGVTEEETMEFF 487
N A P AA P + + RRLY+GN+ + TE E EFF
Sbjct: 22 NGTAPAPAAAQPTTDAAAASADEGRRLYIGNLAYATTEGELKEFF 66
>UniRef50_Q0LJY9 Cluster: Response regulator receiver; n=1;
Herpetosiphon aurantiacus ATCC 23779|Rep: Response
regulator receiver - Herpetosiphon aurantiacus ATCC
23779
Length = 248
Score = 35.1 bits (77), Expect = 1.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 271 ALLGCTAAGIRAYHAITIQGDASGGSDSCQYCRRHT 378
AL AG++A IT+ G+A G D+ ++C +HT
Sbjct: 14 ALRAAMVAGLQATKEITVIGEAGSGEDAIEWCAQHT 49
>UniRef50_Q2U8W5 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 104
Score = 34.7 bits (76), Expect = 1.5
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +2
Query: 338 AAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGL 514
AA + N A A + + RRLY+GN+ + TE E EFF GL
Sbjct: 18 AATEATTNGTAPAAPAQSTDAAAASADEGRRLYIGNLAYATTEGELKEFFKNYKVFLGL 76
>UniRef50_A7S854 Cluster: Predicted protein; n=4; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1851
Score = 34.3 bits (75), Expect = 2.0
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +1
Query: 307 YHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVF 486
+H + + GD G C HT C A G YN C+ +T H + F
Sbjct: 1538 HHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTAGEHCELCDDGF 1590
Query: 487 QSTNASIGPGPXRRQPC 537
A PG ++ PC
Sbjct: 1591 YGNAADGTPGDCKQCPC 1607
Score = 33.5 bits (73), Expect = 3.4
Identities = 20/77 (25%), Positives = 28/77 (36%)
Frame = +1
Query: 307 YHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVF 486
+H + + GD G C HT C A G YN C+ +T H + F
Sbjct: 1642 HHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTTGEHCELCDDGF 1694
Query: 487 QSTNASIGPGPXRRQPC 537
PG ++ PC
Sbjct: 1695 YGNTTDGTPGDCKQCPC 1711
>UniRef50_Q6C1Y4 Cluster: Similarities with sp|P34761 Saccharomyces
cerevisiae YNL197c; n=1; Yarrowia lipolytica|Rep:
Similarities with sp|P34761 Saccharomyces cerevisiae
YNL197c - Yarrowia lipolytica (Candida lipolytica)
Length = 625
Score = 34.3 bits (75), Expect = 2.0
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 431 LYVGNIPFGVTEEETMEFFNQQ 496
LYVGN+P TEEE M+ F++Q
Sbjct: 516 LYVGNLPMNTTEEELMQLFSKQ 537
>UniRef50_A2Q4R3 Cluster: RNA-binding region RNP-1; n=2; core
eudicotyledons|Rep: RNA-binding region RNP-1 - Medicago
truncatula (Barrel medic)
Length = 257
Score = 33.9 bits (74), Expect = 2.6
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAXAAGNPV 538
TR ARR+YVG +P E+ FF+Q M + G + +G+ V
Sbjct: 174 TRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSV 216
>UniRef50_A4RFH0 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 620
Score = 33.9 bits (74), Expect = 2.6
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 407 TITRQARRLYVGNIPFGVTEEETMEFFNQQMH 502
T +RQ++RL + N+P G TE+ + F N Q++
Sbjct: 287 TNSRQSKRLILSNLPAGTTEDSLISFLNLQLN 318
>UniRef50_A7PJ01 Cluster: Chromosome chr13 scaffold_17, whole genome
shotgun sequence; n=3; Magnoliophyta|Rep: Chromosome
chr13 scaffold_17, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 270
Score = 33.5 bits (73), Expect = 3.4
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFFNQ 493
R+YVGN+P+ +TE+E +FF++
Sbjct: 133 RIYVGNLPWDITEDEVRKFFSR 154
>UniRef50_Q7RQR4 Cluster: KED; n=3; Plasmodium (Vinckeia)|Rep: KED -
Plasmodium yoelii yoelii
Length = 858
Score = 33.5 bits (73), Expect = 3.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 377 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFN 490
P+ + + + + AR LYVGNIP + +E ++F N
Sbjct: 399 PELGLSTIDANAEKTARELYVGNIPQNIDIQEIVKFLN 436
>UniRef50_Q5CSE3 Cluster: Splicing factor U2AF like SnRNP auxilary
factor large subunit, RRM domain; n=2;
Cryptosporidium|Rep: Splicing factor U2AF like SnRNP
auxilary factor large subunit, RRM domain -
Cryptosporidium parvum Iowa II
Length = 330
Score = 33.5 bits (73), Expect = 3.4
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 413 TRQARRLYVGNIP--FGVTEEETMEFFNQQMHLSGLAXAAG-NPV 538
TR+ RRLY GN+P G+TE + Q+M L GL NP+
Sbjct: 52 TRRFRRLYFGNLPINLGLTESSFQQIVWQEMALRGLCLNPNENPI 96
>UniRef50_A0EAC5 Cluster: Chromosome undetermined scaffold_86, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_86,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 402
Score = 33.5 bits (73), Expect = 3.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 422 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPV 538
A RLY+GN+P V ++ + QQM G G+PV
Sbjct: 87 AVRLYLGNLPDNVDKDHLHNYIRQQMESHGAVLDPGDPV 125
>UniRef50_UPI00006CBD24 Cluster: hypothetical protein
TTHERM_00151210; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00151210 - Tetrahymena
thermophila SB210
Length = 554
Score = 33.1 bits (72), Expect = 4.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 422 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPV 538
A R+Y+GNIP V E+ +F +QM +G GNP+
Sbjct: 216 ALRVYIGNIPDPVDVEDVCKFVFEQMANAGGLLEPGNPL 254
>UniRef50_A5GEF6 Cluster: RNP-1 like RNA-binding protein; n=1;
Geobacter uraniumreducens Rf4|Rep: RNP-1 like
RNA-binding protein - Geobacter uraniumreducens Rf4
Length = 85
Score = 33.1 bits (72), Expect = 4.6
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 425 RRLYVGNIPFGVTEEETMEFFN 490
R+L+VGN+PF TE+ EFF+
Sbjct: 3 RKLFVGNVPFTATEDHLKEFFS 24
>UniRef50_A5K369 Cluster: U2 snRNP auxiliary factor, putative; n=5;
Plasmodium|Rep: U2 snRNP auxiliary factor, putative -
Plasmodium vivax
Length = 914
Score = 33.1 bits (72), Expect = 4.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 416 RQARRLYVGNIPFGVTEEETMEFFNQQM 499
++ R+LY+GNIP +EE ++FFN +
Sbjct: 541 KKQRKLYIGNIPPNSKQEELIDFFNNTL 568
>UniRef50_Q2JJY2 Cluster: Putative uncharacterized protein; n=2;
Synechococcus|Rep: Putative uncharacterized protein -
Synechococcus sp. (strain JA-2-3B'a(2-13))
(Cyanobacteria bacteriumYellowstone B-Prime)
Length = 98
Score = 32.7 bits (71), Expect = 6.0
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 389 RQLVVCRRQYWQESDPPLASP-CIVMA*YARIPAAVHP 279
RQ+V+ RRQ E PPL P C+ A A + AVHP
Sbjct: 32 RQVVLLRRQRAGEFGPPLGDPSCVFSAHSAWLRCAVHP 69
>UniRef50_Q70JP5 Cluster: Putative DIP2 protein; n=5; BEP clade|Rep:
Putative DIP2 protein - Triticum aestivum (Wheat)
Length = 259
Score = 32.7 bits (71), Expect = 6.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFFNQQMHL 505
+LYV N+ +GVT+E+ E F++ HL
Sbjct: 116 KLYVSNLHYGVTKEDLQELFSEMGHL 141
>UniRef50_Q3EBP3 Cluster: Uncharacterized protein At2g33435.1; n=2;
Arabidopsis thaliana|Rep: Uncharacterized protein
At2g33435.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 979
Score = 32.7 bits (71), Expect = 6.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSG 511
TR+ RRLY N+P +E+ +E FN M SG
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSG 906
>UniRef50_O22794 Cluster: Putative splicing factor U2AF large chain;
n=2; Arabidopsis thaliana|Rep: Putative splicing factor
U2AF large chain - Arabidopsis thaliana (Mouse-ear
cress)
Length = 475
Score = 32.7 bits (71), Expect = 6.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSG 511
TR+ RRLY N+P +E+ +E FN M SG
Sbjct: 206 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSG 238
>UniRef50_Q57W18 Cluster: RNA-binding protein, putative; n=1;
Trypanosoma brucei|Rep: RNA-binding protein, putative -
Trypanosoma brucei
Length = 857
Score = 32.7 bits (71), Expect = 6.0
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 410 ITRQARRLYVGNIPFGVTEEETMEF 484
+ R++RR+ +GNIPF TEE+ +F
Sbjct: 310 VVRESRRIRLGNIPFIATEEDVKQF 334
>UniRef50_UPI0000E47894 Cluster: PREDICTED: similar to scavenger
receptor cysteine-rich protein type 12 precursor; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
scavenger receptor cysteine-rich protein type 12
precursor - Strongylocentrotus purpuratus
Length = 2255
Score = 32.3 bits (70), Expect = 8.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 271 ALLGCTAAGIRAYHAITIQGDASGGSD-SCQYCRRHTTSCRAGGGFDYNTSSAK 429
A + C+ G+R + G + SD SCQ CR H +C+ DY+ S+ K
Sbjct: 1041 AAIQCSGPGLRECTSECPLGFYTSQSDRSCQPCRVHCQTCQQAISSDYSCSACK 1094
>UniRef50_Q7ZUX2 Cluster: Cstf2 protein; n=2; Danio rerio|Rep: Cstf2
protein - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 339
Score = 32.3 bits (70), Expect = 8.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493
AA + R R ++VGNIP+ TEE+ + F++
Sbjct: 10 AAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 46
>UniRef50_Q8IBU0 Cluster: Putative uncharacterized protein
PF07_0066; n=3; Plasmodium|Rep: Putative uncharacterized
protein PF07_0066 - Plasmodium falciparum (isolate 3D7)
Length = 1125
Score = 32.3 bits (70), Expect = 8.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 389 VPVVGSTITRQARRLYVGNIPFGVTEEETMEFFN 490
+P + I + AR LYVGNIP + +E +++ N
Sbjct: 639 LPTIDVNIEKTARELYVGNIPQHIDIQEIVKYLN 672
>UniRef50_Q552N9 Cluster: RNA-binding region-containing protein;
n=2; Dictyostelium discoideum|Rep: RNA-binding
region-containing protein - Dictyostelium discoideum AX4
Length = 299
Score = 32.3 bits (70), Expect = 8.0
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNP 535
AA +T T +++VG +P GVTE + E+F++ +S + NP
Sbjct: 62 AAKDESSNTKTDDDLKVFVGQLPSGVTEYDLKEYFSECGDISNIKILNSNP 112
>UniRef50_Q4N3F2 Cluster: U2 small nuclear ribonucleoprotein,
auxiliary factor, large subunit, putative; n=2;
Theileria|Rep: U2 small nuclear ribonucleoprotein,
auxiliary factor, large subunit, putative - Theileria
parva
Length = 380
Score = 32.3 bits (70), Expect = 8.0
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 416 RQARRLYVGNIPFGVTEEETMEFFN 490
++ +RLYVGN+P G ++ ++FFN
Sbjct: 53 KRQKRLYVGNLPSGTKLQDVVDFFN 77
>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
proline-and glutamine-rich - Bombyx mori (Silk moth)
Length = 641
Score = 32.3 bits (70), Expect = 8.0
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 290 PPGFEHITPLQYKAMQAAGQIP--ANIVADTPQAAVPVVGSTITRQAR-RLYVGNIPFGV 460
PPG +++ P Q + + + ++ + D P P+ S + R RLY+GN+ V
Sbjct: 230 PPGQDNMKPAQREEIILSNKLKDLQGPLFDLP----PMEQSEVKFNGRSRLYIGNLTNDV 285
Query: 461 TEEETMEFFN 490
TEEE M+ F+
Sbjct: 286 TEEEIMKMFS 295
>UniRef50_A7AU39 Cluster: RNA recognition motif (RRM)-containing
protein; n=1; Babesia bovis|Rep: RNA recognition motif
(RRM)-containing protein - Babesia bovis
Length = 383
Score = 32.3 bits (70), Expect = 8.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 401 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHL 505
G ++ RRLY+GN+P G T + +EF + + L
Sbjct: 51 GDDNKKRHRRLYIGNLPSGTTYKALVEFLSAALRL 85
>UniRef50_A4VDP3 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 471
Score = 32.3 bits (70), Expect = 8.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 416 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSG 511
R ARRLY+GNIP + +E E+ + + +G
Sbjct: 31 RHARRLYIGNIPETINQEYLSEWLYRSLEAAG 62
>UniRef50_Q6C4U4 Cluster: Similarities with tr|O13845
Schizosaccharomyces pombe Putative splicing factor; n=1;
Yarrowia lipolytica|Rep: Similarities with tr|O13845
Schizosaccharomyces pombe Putative splicing factor -
Yarrowia lipolytica (Candida lipolytica)
Length = 621
Score = 32.3 bits (70), Expect = 8.0
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFF 487
RLYVGNI FGVTE E ++ F
Sbjct: 447 RLYVGNIYFGVTEGEIIQIF 466
>UniRef50_Q00880 Cluster: Cutinase negative acting protein; n=2;
Sordariomycetes|Rep: Cutinase negative acting protein -
Nectria haematococca
Length = 507
Score = 32.3 bits (70), Expect = 8.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 317 LQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493
L Y + A PA AD + G T++ ++ L+VGN+P V ++ EFF +
Sbjct: 324 LDYANARPADANPAGRAADRAKRH----GDTLSPESDTLFVGNLPIDVDQDAVREFFGE 378
>UniRef50_A6SSI6 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 322
Score = 32.3 bits (70), Expect = 8.0
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +2
Query: 407 TITRQARRLYVGNIPFGVTEEETMEFFN 490
+I ++ ++VGNIP+G+TEE+ ++ F+
Sbjct: 2 SIKPPSKSVFVGNIPYGLTEEQIIDIFS 29
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,736,401
Number of Sequences: 1657284
Number of extensions: 10428538
Number of successful extensions: 27720
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 26751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27709
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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