BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P01_F_G21 (560 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF prot... 136 4e-32 BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA au... 136 4e-32 BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA au... 136 4e-32 Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation fact... 33 0.91 Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation fact... 33 0.91 M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation fact... 33 0.91 BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation fa... 33 0.91 BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage sti... 33 0.91 BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation fa... 33 0.91 Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein. 31 2.8 U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55... 31 2.8 U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein. 31 2.8 L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA, com... 31 2.8 CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein. 31 2.8 BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containi... 31 2.8 BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containi... 31 2.8 BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containi... 31 2.8 BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation fa... 31 2.8 BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein. 31 2.8 BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein. 31 2.8 BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containi... 31 2.8 AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein. 31 2.8 AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 31 3.7 AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 31 3.7 AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 31 3.7 X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 30 6.4 X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 30 6.4 BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 30 6.4 BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 30 6.4 AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 30 6.4 >X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF protein. Length = 475 Score = 136 bits (330), Expect = 4e-32 Identities = 66/99 (66%), Positives = 72/99 (72%), Gaps = 8/99 (8%) Frame = +2 Query: 275 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 430 YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150 Query: 431 LYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPVFGL 547 LYVGNIPFG+TEE M+FFN QM L GL A GNPV + Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV 189 >BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA auxiliary factor 2 protein. Length = 471 Score = 136 bits (330), Expect = 4e-32 Identities = 66/99 (66%), Positives = 72/99 (72%), Gaps = 8/99 (8%) Frame = +2 Query: 275 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 430 YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150 Query: 431 LYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPVFGL 547 LYVGNIPFG+TEE M+FFN QM L GL A GNPV + Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV 189 >BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA auxiliary factor 2 protein. Length = 471 Score = 136 bits (330), Expect = 4e-32 Identities = 66/99 (66%), Positives = 72/99 (72%), Gaps = 8/99 (8%) Frame = +2 Query: 275 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 430 YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150 Query: 431 LYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPVFGL 547 LYVGNIPFG+TEE M+FFN QM L GL A GNPV + Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV 189 >Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa protein. Length = 577 Score = 32.7 bits (71), Expect = 0.91 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493 A + V + R R ++VGNIP+ TEE+ + F++ Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38 >Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa protein. Length = 577 Score = 32.7 bits (71), Expect = 0.91 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493 A + V + R R ++VGNIP+ TEE+ + F++ Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38 >M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation factor protein. Length = 577 Score = 32.7 bits (71), Expect = 0.91 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493 A + V + R R ++VGNIP+ TEE+ + F++ Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38 >BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa protein. Length = 577 Score = 32.7 bits (71), Expect = 0.91 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493 A + V + R R ++VGNIP+ TEE+ + F++ Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38 >BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kD protein. Length = 559 Score = 32.7 bits (71), Expect = 0.91 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493 A + V + R R ++VGNIP+ TEE+ + F++ Sbjct: 1 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 37 >BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa protein. Length = 577 Score = 32.7 bits (71), Expect = 0.91 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493 A + V + R R ++VGNIP+ TEE+ + F++ Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38 >Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55 protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA, complete cds. ). Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containing, octamer-binding protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containing, octamer-binding protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containing, octamer-binding protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant protein. Length = 616 Score = 31.1 bits (67), Expect = 2.8 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = +2 Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493 +++ V + R R ++VGNIP+ TEE+ + F++ Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE 38 >BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containing, octamer-binding protein. Length = 471 Score = 31.1 bits (67), Expect = 2.8 Identities = 22/69 (31%), Positives = 30/69 (43%) Frame = +2 Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466 PPP P+ QA+ Q + D P G Q RL+VGN+P +TE Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87 Query: 467 EETMEFFNQ 493 EE + F + Sbjct: 88 EEMRKLFEK 96 >AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein. Length = 616 Score = 31.1 bits (67), Expect = 2.8 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = +2 Query: 383 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493 +++ V + R R ++VGNIP+ TEE+ + F++ Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE 38 >AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated repressor protein (SHARP) protein. Length = 3664 Score = 30.7 bits (66), Expect = 3.7 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +2 Query: 410 ITRQARRLYVGNIPFGVTEEETMEFFNQ 493 + R+ R L+VGN+P V EE+ +E F + Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28 >AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated repressor protein (SHARP) protein. Length = 3664 Score = 30.7 bits (66), Expect = 3.7 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +2 Query: 410 ITRQARRLYVGNIPFGVTEEETMEFFNQ 493 + R+ R L+VGN+P V EE+ +E F + Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28 >AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transcription cofactor protein. Length = 3664 Score = 30.7 bits (66), Expect = 3.7 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +2 Query: 410 ITRQARRLYVGNIPFGVTEEETMEFFNQ 493 + R+ R L+VGN+P V EE+ +E F + Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28 >X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage factor I 68 kDa subunit protein. Length = 551 Score = 29.9 bits (64), Expect = 6.4 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 350 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 481 +P + D + A P V T T + LY+GN+ + T+E+ E Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99 >X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. Length = 551 Score = 29.9 bits (64), Expect = 6.4 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 350 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 481 +P + D + A P V T T + LY+GN+ + T+E+ E Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99 >BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. Length = 478 Score = 29.9 bits (64), Expect = 6.4 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 350 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 481 +P + D + A P V T T + LY+GN+ + T+E+ E Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99 >BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. Length = 588 Score = 29.9 bits (64), Expect = 6.4 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 350 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 481 +P + D + A P V T T + LY+GN+ + T+E+ E Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99 >AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenylation specific factor 6, 68 kD subunit variant protein. Length = 551 Score = 29.9 bits (64), Expect = 6.4 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 350 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 481 +P + D + A P V T T + LY+GN+ + T+E+ E Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 78,127,516 Number of Sequences: 237096 Number of extensions: 1621931 Number of successful extensions: 7481 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 7372 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7478 length of database: 76,859,062 effective HSP length: 86 effective length of database: 56,468,806 effective search space used: 5646880600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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