Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_G21
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 37 0.011
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 33 0.17
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.30
At3g46300.1 68416.m05011 hypothetical protein 31 0.53
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 30 0.92
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 30 1.2
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 30 1.2
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 30 1.2
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 1.2
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 29 1.6
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 1.6
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 29 1.6
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 2.1
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 2.1
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 2.1
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 2.8
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 2.8
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 29 2.8
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 28 3.7
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 28 3.7
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 28 3.7
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 28 3.7
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 28 3.7
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 28 3.7
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 3.7
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 3.7
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 3.7
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 28 4.9
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 4.9
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 28 4.9
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 6.5
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 27 6.5
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 27 6.5
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 27 6.5
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 27 8.6
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)... 27 8.6
At5g06100.1 68418.m00677 myb family transcription factor (MYB33)... 27 8.6
At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /... 27 8.6
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 8.6
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 350 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSG 511
+P + P V + TR ARR+YVG +P E+ FF+Q M G
Sbjct: 230 VPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIG 283
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSG 511
TR+ RRLY N+P +E+ +E FN M SG
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSG 906
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.30
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 377 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493
P PV + +A LY+G IP G E E FF+Q
Sbjct: 44 PARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQ 82
>At3g46300.1 68416.m05011 hypothetical protein
Length = 141
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 277 LGCTAAGIRAYHAITIQGDASG-GSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTL 453
+ C +R+Y T + + G G D RRH SC GGG +AK R +
Sbjct: 57 ISCRQMYLRSYTFSTEENEEDGDGGDGEAVTRRHNQSCFRGGG--GRKKAAKNAMRNNKT 114
Query: 454 WRHR 465
W R
Sbjct: 115 WSCR 118
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 30.3 bits (65), Expect = 0.92
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFFN 490
RL+V N+P+ TEEE ME F+
Sbjct: 262 RLFVRNLPYTATEEELMEHFS 282
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSG 511
TR ARR+YVG + E+ FF+Q M G
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVG 267
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSG 511
TR ARR+YVG + E+ FF+Q M G
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVG 267
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSG 511
TR ARR+YVG + E+ FF+Q M G
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVG 267
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 422 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAG 529
+R L+VGN+P G+ E E + F + L LA G
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQPG 57
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 380 QAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493
Q AV GS+I +LY+ N+ +GV+ E+ E F++
Sbjct: 94 QTAVVGGGSSI-ETGTKLYISNLDYGVSNEDIKELFSE 130
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFFNQ 493
RLYVGN+P+ +T E + F +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGE 138
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 425 RRLYVGNIPFGVTEEETMEFFNQ 493
R LY+ N+PF +T E+T + F +
Sbjct: 20 RLLYICNLPFSITSEDTYDLFGR 42
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 419 QARRLYVGNIPFGVTEEETMEFFNQ 493
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 419 QARRLYVGNIPFGVTEEETMEFFNQ 493
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 419 QARRLYVGNIPFGVTEEETMEFFNQ 493
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 425 RRLYVGNIPFGVTEEETMEFFNQ 493
R LYV N+PF +T EE + F +
Sbjct: 19 RVLYVRNLPFNITSEEMYDIFGK 41
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQ 493
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSK 29
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQ 493
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSK 29
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 425 RRLYVGNIPFGVTEEETMEFFNQQMHL 505
R +++GN+PF V +EE + F + +L
Sbjct: 283 RTVFMGNLPFDVKDEEVYQLFTGKSNL 309
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 416 RQARRLYVGNIPFGVTEEETMEFFNQ 493
RQ +++VGN+P + + E EFF Q
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQ 187
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 419 QARRLYVGNIPFGVTEEETMEFF 487
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 419 QARRLYVGNIPFGVTEEETMEFF 487
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 347 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 451
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 347 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 451
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQ 493
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQ 493
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 413 TRQARRLYVGNIPFGVTEEETMEFFNQ 493
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 416 RQARRLYVGNIPFGVTEEETMEFFNQ 493
R + +Y+GN+ F TEE+ E F++
Sbjct: 31 RASTTVYIGNVSFYTTEEQLYELFSR 56
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 422 ARRLYVGNIPFGVTEEE 472
ARR+Y+GNIP VT E+
Sbjct: 75 ARRVYIGNIPRTVTNEQ 91
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 419 QARRLYVGNIPFGVTEEETME 481
Q R ++VGNIP+ TEE+ E
Sbjct: 7 QRRCVFVGNIPYDATEEQLRE 27
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 419 QARRLYVGNIPFGVTEEETMEFFNQ 493
+ ++++VG IP V ++E EFF Q
Sbjct: 128 KTKKIFVGGIPSSVDDDEFKEFFMQ 152
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +2
Query: 287 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 466
PP ++PLQ + +I + A+ +V + R+A+ V PF T
Sbjct: 39 PPSRASSVSPLQASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETL 98
Query: 467 EETMEFFNQQM 499
E + N+Q+
Sbjct: 99 VEVLYNINEQL 109
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFFNQQ 496
RLYVGN+ +GV + FN+Q
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQ 272
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFFNQQ 496
RLYVGN+ +GV + FN+Q
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQ 280
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 419 QARRLYVGNIPFGVTEEETMEFFN 490
Q R + VGN+ G TE + EFF+
Sbjct: 4 QVRSVKVGNLSSGATEHDIKEFFS 27
>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 520
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 291 RRDSSISRHYNTRRCKRRVRFLPILSPTHHKLPCRW 398
R D+ I ++NTR +R+ LP+ P H W
Sbjct: 119 RTDNEIKNYWNTRIKRRQRAGLPLYPPEMHVEALEW 154
>At5g06100.1 68418.m00677 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 451
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 291 RRDSSISRHYNTRRCKRRVRFLPILSPTHHKLPCRW 398
R D+ I ++NTR +R+ LP+ P H W
Sbjct: 119 RTDNEIKNYWNTRIKRRQRAGLPLYPPEMHVEALEW 154
>At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
(Pectinase) {Agrobacterium tumefaciens}; contains
PF00295: Glycosyl hydrolases family 28
Length = 475
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 429 GYMSATYPLASPKKKQWSFSINKCIYR 509
GY S +PL+ P+ Q SI +C YR
Sbjct: 449 GYASDVFPLSCPQLLQKKGSIAQCSYR 475
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFF 487
+LYVG IP+ TE+E +F
Sbjct: 162 KLYVGGIPYQSTEDEIRSYF 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,654
Number of Sequences: 28952
Number of extensions: 226743
Number of successful extensions: 620
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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