Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G20
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    27   8.5  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
           protein ZK688.5b protein.
          Length = 1595

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 247 HQVILLVVLTFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAG 68
           HQ+  +  LT   ++ SF T S  Q  +P Y +     +  +  VT +  P +  SDV G
Sbjct: 456 HQISHMTHLT-ADLDVSFITPSFPQRILPQYAFQSSDEQPLTIPVTHIFEPPRMLSDVGG 514

Query: 67  R 65
           R
Sbjct: 515 R 515


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
           protein ZK688.5a protein.
          Length = 1620

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 247 HQVILLVVLTFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAG 68
           HQ+  +  LT   ++ SF T S  Q  +P Y +     +  +  VT +  P +  SDV G
Sbjct: 456 HQISHMTHLT-ADLDVSFITPSFPQRILPQYAFQSSDEQPLTIPVTHIFEPPRMLSDVGG 514

Query: 67  R 65
           R
Sbjct: 515 R 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,037,277
Number of Sequences: 27780
Number of extensions: 190706
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)