Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G19
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8PF38 Cluster: Transcriptional regulator; n=2; Xanthom...    37   0.36 
UniRef50_Q2VNP0 Cluster: Putative uncharacterized protein; n=1; ...    36   0.84 
UniRef50_UPI0000D9A4AF Cluster: PREDICTED: similar to Thyroid ho...    34   3.4  
UniRef50_A5URA1 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_Q9Y2W1 Cluster: Thyroid hormone receptor-associated pro...    33   4.5  
UniRef50_UPI00015A64A1 Cluster: LOC570454 protein; n=1; Danio re...    33   7.8  
UniRef50_Q4V9H1 Cluster: LOC570454 protein; n=5; Danio rerio|Rep...    33   7.8  

>UniRef50_Q8PF38 Cluster: Transcriptional regulator; n=2;
           Xanthomonas|Rep: Transcriptional regulator - Xanthomonas
           axonopodis pv. citri
          Length = 223

 Score = 37.1 bits (82), Expect = 0.36
 Identities = 28/115 (24%), Positives = 53/115 (46%)
 Frame = +2

Query: 149 NHYRLIAKKCSLIAKLAXPKIFVYRILVCSYRGEANMVIEKLHGLQATSITLNDRFTLLS 328
           +HY  I  + S  A+   P +      +  + GEA +  E L   QA +++    + L  
Sbjct: 27  SHYSAIVPRVSTAAEAHTPLMIDLLAYIEQHIGEAELGTESLQ--QAFALSRASLYRLFQ 84

Query: 329 TAGTDRAAMRMKKRPTVHQYLTQTLNIXNRFLIDQIARKLEYQMKRATLRQRLGL 493
           + G   + +R ++  T H+YL    +    +L+ ++    E Q +RA  +QR G+
Sbjct: 85  SRGGVASYIREQRLSTAHRYLQAYPDCSLTWLLYEMGFASERQFQRA-FQQRFGM 138


>UniRef50_Q2VNP0 Cluster: Putative uncharacterized protein; n=1;
           Methylocapsa acidiphila|Rep: Putative uncharacterized
           protein - Methylocapsa acidiphila
          Length = 733

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +2

Query: 293 SITLNDRFTLLSTAGTDRAAMRMKKRPTVHQYLTQTL--NIXNRFLIDQIARKLEYQMKR 466
           S  +++ +T++   GT +A +   K P + Q L +TL   I  RF  D +A  L  Q  +
Sbjct: 520 SAAMSESYTIVPLFGTAKAEVLQPKWPRISQALFETLQERIAQRF--DYVAPALLSQSVK 577

Query: 467 ATLRQRLGLGQAPF 508
             LR  LG+   PF
Sbjct: 578 EPLRALLGIALRPF 591


>UniRef50_UPI0000D9A4AF Cluster: PREDICTED: similar to Thyroid
           hormone receptor-associated protein 3 (Thyroid hormone
           receptor-associated protein complex 150 kDa component)
           (Trap150); n=1; Macaca mulatta|Rep: PREDICTED: similar
           to Thyroid hormone receptor-associated protein 3
           (Thyroid hormone receptor-associated protein complex 150
           kDa component) (Trap150) - Macaca mulatta
          Length = 289

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 269 KLHGLQATSITLNDRFTLLSTAGTDRAAMRMKKRPTVHQ 385
           K H   ++ +TL++RFT     GT++ A + K RP +H+
Sbjct: 67  KEHHFGSSGMTLHERFTKYLKRGTEQEAAKNKNRPEIHR 105


>UniRef50_A5URA1 Cluster: Putative uncharacterized protein; n=1;
           Roseiflexus sp. RS-1|Rep: Putative uncharacterized
           protein - Roseiflexus sp. RS-1
          Length = 343

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 577 VXEVXGAV*PHQAXEGVPIIELMEWCLTQSKPLT*CRPLHLILQLSSDLVNQ 422
           V E+  A+  HQ    VP+I+ ++  +    P     P H +L++S +L NQ
Sbjct: 289 VTEIETAIQNHQPPHEVPLIQTLDEIIKNPSPDIPALPAHKVLEISRELYNQ 340


>UniRef50_Q9Y2W1 Cluster: Thyroid hormone receptor-associated
           protein 3; n=35; Tetrapoda|Rep: Thyroid hormone
           receptor-associated protein 3 - Homo sapiens (Human)
          Length = 955

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 269 KLHGLQATSITLNDRFTLLSTAGTDRAAMRMKKRPTVHQ 385
           K H   ++ +TL++RFT     GT++ A + KK P +H+
Sbjct: 639 KEHHFGSSGMTLHERFTKYLKRGTEQEAAKNKKSPEIHR 677


>UniRef50_UPI00015A64A1 Cluster: LOC570454 protein; n=1; Danio
           rerio|Rep: LOC570454 protein - Danio rerio
          Length = 696

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 287 ATSITLNDRFTLLSTAGTDRAAMRMKKRPTVHQYLTQTLNIXNR--FLIDQIARKLEYQM 460
           ++ +TL+DRF +      ++  M+ +K P +H+ +  + +   R   L D++   +E   
Sbjct: 573 SSGLTLHDRFAMYQRRAAEKEFMKQRKSPEIHRRIDVSPSAFKRHSLLFDEVKSSMENSF 632

Query: 461 K 463
           K
Sbjct: 633 K 633


>UniRef50_Q4V9H1 Cluster: LOC570454 protein; n=5; Danio rerio|Rep:
           LOC570454 protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 479

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 287 ATSITLNDRFTLLSTAGTDRAAMRMKKRPTVHQYLTQTLNIXNR--FLIDQIARKLEYQM 460
           ++ +TL+DRF +      ++  M+ +K P +H+ +  + +   R   L D++   +E   
Sbjct: 351 SSGLTLHDRFAMYQRRAAEKEFMKQRKSPEIHRRIDVSPSAFKRHSLLFDEVKSSMENSF 410

Query: 461 K 463
           K
Sbjct: 411 K 411


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,198,769
Number of Sequences: 1657284
Number of extensions: 10230866
Number of successful extensions: 20640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20630
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)