Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G19
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.1  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    26   5.4  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   9.5  

>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 315 NLSFRVILVACRPCNFSITIFASPR*LQTKIL 220
           N  + +I +A  PCNFS ++F   + ++  +L
Sbjct: 39  NRLYEIISIALNPCNFSKSLFWLRKKIKNSVL 70


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 191 KLAXPKIFVYRILVCSYRGEANMVIEKLHGLQATSITLNDRFTL----LSTAGTDRAAMR 358
           +L   ++  Y I+V S     N+ IEKL  +  +S  L + +TL    L+ + T+  A R
Sbjct: 86  ELVQHRVRYYEIIVKSILKSLNIPIEKLRFVIGSSYQLKEDYTLDNFRLAASTTEHTARR 145


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 242 RGEANMVIEKLHGLQATSITLNDRFTLLSTAGTD--RAAMRMKKRPTVHQYLTQTLNIXN 415
           +GE N+V ++L  L +  +    +  L + AG D    A+++ KR  V++ + +      
Sbjct: 451 QGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGALKLSKR-LVYKVICK-FEESE 508

Query: 416 RFLIDQIARKLEYQMKRATLRQRLG 490
           R     +AR +E  M       +LG
Sbjct: 509 RDFYSNLARNMERTMSNFVNSGKLG 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,088
Number of Sequences: 5004
Number of extensions: 45802
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)