Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G19
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40165| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  

>SB_40165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 554 LTSSSXGRCSDYRTDGMVLDPVQAVDVMS-PASSDTPAFERSGQSRNGXLCSGFV 393
           L +SS   C DY+    V +P  A +V      S T AFER+G+S+N      F+
Sbjct: 13  LPASSGLYCVDYQRGSNVPEPQGASNVPELQFRSRTSAFERAGKSKNTSSVRSFM 67


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = -1

Query: 508 EWCLTQSKPLT*CRPLHLILQLSSDLVNQETVXYVQGLCKVLMYGRTFFHAHSSAISSGS 329
           E+ LTQ+  +     ++ I   S +++  E+V  + G  +VL+Y R  FH   S    G 
Sbjct: 476 EYLLTQNDVIN---SIYYIASGSMEVLQGESVAAILGQAEVLIYDRYMFHKRRS--YPGC 530

Query: 328 REQSKSIVQGNTGGLQTV 275
           +    S+VQ N   ++ +
Sbjct: 531 QSLQTSLVQLNERSMEAL 548


>SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 311 RFTLLSTAGTDRAAMRMKKR 370
           RFT+LST G DR   R+K+R
Sbjct: 34  RFTMLSTGGRDRIVFRIKRR 53


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 444  FRAIWSIKKRFXMFRVCVRY*CTVGRFF 361
            FR +W+I  R  + R  +R+ C+  RF+
Sbjct: 956  FRCVWTIGSRTQVSRALIRFVCSRSRFY 983


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,798,923
Number of Sequences: 59808
Number of extensions: 327491
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)