Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G18
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.2  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 534 NKMTLKKYSNVTFKGFSXFNKMPVNAE 614
           N +T    SN+T  G    N +PV+++
Sbjct: 122 NTLTFHTSSNLTVSGLRCVNGIPVSSK 148


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 534 NKMTLKKYSNVTFKGFSXFNKMPVNAE 614
           N +T    SN+T  G    N +PV+++
Sbjct: 122 NTLTFHTSSNLTVSGLRCVNGIPVSSK 148


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 451 WWSWAEGXKTF 483
           W SW EG K F
Sbjct: 384 WLSWEEGMKVF 394


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -1

Query: 458 DHQLHQSSGAFARNHMNYFXQXHHXHHSI 372
           D Q + S   +  NH  Y    H+  H++
Sbjct: 425 DFQYYVSYDFYKMNHPVYHKDPHYGFHNV 453


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,287
Number of Sequences: 336
Number of extensions: 2603
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)