Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G18
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    64   2e-11
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   6.6  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   8.7  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   8.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.7  

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
 Frame = +2

Query: 68  PPVLWAQR--KED-----VFLTFSV-ETKDPTIKIXKDSXYFTGEGAPDNTLHEVTIALY 223
           P VLWAQR  K+D     ++LT  + +  DP I +  +      +    N  + V I  +
Sbjct: 8   PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGA-NAHYAVQIDFF 66

Query: 224 DTVLPEKSVFVNXGXCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWNDXDDE 394
             +  EKS +   G  +  +L K++    FWP LTK+K + H+L+ DF++W D D++
Sbjct: 67  KDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRWVDEDEQ 123


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 291 FRNIISTHXPLFTKTLFSGRTVSYSAIVTSCSVL 190
           FR+ ++   PLF + +F+    SY+ +    ++L
Sbjct: 469 FRSAMAASFPLFARAMFNNTGPSYAPVAWGSTIL 502


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = -1

Query: 221 TVLS-LPHVVYYPAHLHL*NTXNPF---XF*SSDL*F-PH*M*EKHLPFVVPIILAV 66
           TVLS LP V Y P  +H+  T +P     F +S L + P  M   ++P + PI +A+
Sbjct: 366 TVLSGLPSVAYTPPVMHIPTTNSPLTPQSFTNSFLGYLPISMPVANMPAIAPISVAL 422


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 315 QNGPSVFSFRNIISTHXPLFTKTLFSGRTVSYSAIVTSCSVLSGAPSPV 169
           Q    + S R +IS        +LF G  +    + T C+++SGA + V
Sbjct: 357 QTNNLIRSNRELISLGAANIGSSLFCGLPICGGYLRTKCNIMSGARTQV 405


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 104 FLTFSVETK-DPTIKIXKDSXYFTGEGAPDNTLHEVTIALYDTVLPE 241
           F +FS + K    I   KD  YF  +G P+  L + T  + +  L E
Sbjct: 666 FFSFSSDRKASGAIFEYKDKYYFVVKGMPERVLQQSTSVITNGSLDE 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,719
Number of Sequences: 5004
Number of extensions: 41714
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)