Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G18
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529...    70   2e-12
03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646...    69   2e-12
08_02_0588 + 19036509-19039235                                         25   0.92 
01_06_0311 - 28377414-28377623,28377758-28377856,28378116-283782...    28   6.8  

>03_03_0158 -
           14951504-14951568,14952722-14952797,14952876-14952943,
           14952997-14953156,14953239-14953425,14953982-14953986
          Length = 186

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
 Frame = +2

Query: 68  PPVLWAQRKEDVFLTFSV-ETKDPTIKIXKDSXY-FTGEGAPDNTLHEVTIALYDTVLPE 241
           P   WAQR + VFLT  + + +D  + +  +  + F+ +G  D+T +E+ + L+D V  E
Sbjct: 5   PSTKWAQRSDKVFLTIELPDARDVKLNLKPEGQFIFSAKGPADDTPYELDLELFDAVNVE 64

Query: 242 KSVFVNXGXCVEMILRKEKTDGPFWPTLTKDKKKPH-YLKIDFNKWNDXDDE 394
           +S        +  +++K   +  +WP L K + KP  +LK+D++KW D DDE
Sbjct: 65  ESKAAVAARSICYLIKK--AESKWWPRLLKKEGKPPVFLKVDWDKWQDEDDE 114


>03_05_0537 +
           25363026-25363217,25363672-25363828,25364660-25364694,
           25364803-25364848,25365277-25365311
          Length = 154

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = +2

Query: 68  PPVLWAQRKEDVFLTFSV-ETKDPTIKIXKDSXYFTGEGAPDNTLHEVTIALYDTVLPEK 244
           P VLWAQR E ++LT S+ + KD  +K  +    F+     +      T+ L+D+VLPE 
Sbjct: 7   PEVLWAQRSEKIYLTISLPDAKDVVLKT-EPQGLFSFLAVANGEPFSFTLELFDSVLPEG 65

Query: 245 SVFVNXGXCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWNDXDDEXE 400
           S          +I   +K    +W  L K ++K  Y+K+D+NKW D D+E +
Sbjct: 66  SKTKTKMGLRNIICSIQKEKKGWWKRLLKSEEKHPYIKVDWNKWCDEDEESD 117


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 24.6 bits (51), Expect(2) = 0.92
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 424 ANAPELWWSWWSW 462
           AN   ++W+WW W
Sbjct: 10  ANLVRVFWAWWWW 22



 Score = 24.6 bits (51), Expect(2) = 0.92
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +1

Query: 442 WWSWWSWAE 468
           WW WW W +
Sbjct: 20  WWWWWWWGD 28


>01_06_0311 -
           28377414-28377623,28377758-28377856,28378116-28378253,
           28378697-28378827,28378920-28379066,28379164-28379293,
           28379625-28379654,28380138-28380416
          Length = 387

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 104 FLTFSVETKDPTIKIXKDSXYFTGEGAPDNTL 199
           FL     TKD T+K+ +D  +   EG PD+ +
Sbjct: 341 FLYEKASTKDKTLKLYEDGYHSILEGEPDDRI 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,873,974
Number of Sequences: 37544
Number of extensions: 246087
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)